Results 41 - 58 of 58 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26463 | 3' | -56.4 | NC_005357.1 | + | 31004 | 0.7 | 0.321421 |
Target: 5'- -aCGcGCGAcCUGUCCACGggcuugccggCCGAGGCa -3' miRNA: 3'- aaGC-CGCUuGACAGGUGCg---------GGCUUCG- -5' |
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26463 | 3' | -56.4 | NC_005357.1 | + | 17674 | 0.71 | 0.313502 |
Target: 5'- gUCGGCGGGCUGg--GCGUaggCGAAGCg -3' miRNA: 3'- aAGCCGCUUGACaggUGCGg--GCUUCG- -5' |
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26463 | 3' | -56.4 | NC_005357.1 | + | 29791 | 0.73 | 0.223866 |
Target: 5'- uUUCGGCauacGCUGUCuCGCGCUCGAuGCc -3' miRNA: 3'- -AAGCCGcu--UGACAG-GUGCGGGCUuCG- -5' |
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26463 | 3' | -56.4 | NC_005357.1 | + | 8529 | 0.68 | 0.461544 |
Target: 5'- -cCGGCGAACUugcccagguaucgcaGgCCGCGCUCGAccucauccugGGCg -3' miRNA: 3'- aaGCCGCUUGA---------------CaGGUGCGGGCU----------UCG- -5' |
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26463 | 3' | -56.4 | NC_005357.1 | + | 41597 | 0.67 | 0.477891 |
Target: 5'- gUCGGCucGCUGUCUcuGCGCgCGcucAAGCc -3' miRNA: 3'- aAGCCGcuUGACAGG--UGCGgGC---UUCG- -5' |
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26463 | 3' | -56.4 | NC_005357.1 | + | 14817 | 0.66 | 0.574383 |
Target: 5'- cUCGGCGGcGCUG-CCuuCGCCC-AGGUc -3' miRNA: 3'- aAGCCGCU-UGACaGGu-GCGGGcUUCG- -5' |
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26463 | 3' | -56.4 | NC_005357.1 | + | 27417 | 0.66 | 0.563365 |
Target: 5'- gUCGcGCGc-CUGgcgcaCCGCGCCCGGcGGCc -3' miRNA: 3'- aAGC-CGCuuGACa----GGUGCGGGCU-UCG- -5' |
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26463 | 3' | -56.4 | NC_005357.1 | + | 804 | 0.66 | 0.552403 |
Target: 5'- -cCGGCGAcGCg--CCGCGCCC--AGCc -3' miRNA: 3'- aaGCCGCU-UGacaGGUGCGGGcuUCG- -5' |
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26463 | 3' | -56.4 | NC_005357.1 | + | 26053 | 0.66 | 0.552403 |
Target: 5'- -gCGGCGGGCgcgcUCCAUGCgcucggcgaacUCGggGCg -3' miRNA: 3'- aaGCCGCUUGac--AGGUGCG-----------GGCuuCG- -5' |
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26463 | 3' | -56.4 | NC_005357.1 | + | 30391 | 0.66 | 0.549128 |
Target: 5'- gUCGGUGAuaACggcGUCCACGCUuucgcucggcauggCGAugAGCg -3' miRNA: 3'- aAGCCGCU--UGa--CAGGUGCGG--------------GCU--UCG- -5' |
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26463 | 3' | -56.4 | NC_005357.1 | + | 28379 | 0.66 | 0.540422 |
Target: 5'- cUUGGCGAGgUGUUCcaguucgACGCCgGcGGCg -3' miRNA: 3'- aAGCCGCUUgACAGG-------UGCGGgCuUCG- -5' |
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26463 | 3' | -56.4 | NC_005357.1 | + | 30612 | 0.67 | 0.530684 |
Target: 5'- aUCGGCGAuCUGUUCuuGCgaccagCCGgcGCg -3' miRNA: 3'- aAGCCGCUuGACAGGugCG------GGCuuCG- -5' |
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26463 | 3' | -56.4 | NC_005357.1 | + | 13647 | 0.67 | 0.530684 |
Target: 5'- -cCGGCGcGGCcGUCCAUGUCCuuGGUg -3' miRNA: 3'- aaGCCGC-UUGaCAGGUGCGGGcuUCG- -5' |
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26463 | 3' | -56.4 | NC_005357.1 | + | 1355 | 0.67 | 0.498718 |
Target: 5'- gUCGGCGGccuuGCgcaUCCgGCGaCCGAAGCg -3' miRNA: 3'- aAGCCGCU----UGac-AGG-UGCgGGCUUCG- -5' |
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26463 | 3' | -56.4 | NC_005357.1 | + | 26826 | 0.67 | 0.498718 |
Target: 5'- uUUUGGCaGGCUGcgCCGC-CCCGAuggAGCg -3' miRNA: 3'- -AAGCCGcUUGACa-GGUGcGGGCU---UCG- -5' |
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26463 | 3' | -56.4 | NC_005357.1 | + | 18039 | 0.67 | 0.498718 |
Target: 5'- gUCGGCGGGCUG-CUugGgggccuuaCCGgcGCg -3' miRNA: 3'- aAGCCGCUUGACaGGugCg-------GGCuuCG- -5' |
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26463 | 3' | -56.4 | NC_005357.1 | + | 6646 | 0.67 | 0.498718 |
Target: 5'- cUUGGcCGGAgUGUCCGCGCUCauGGUc -3' miRNA: 3'- aAGCC-GCUUgACAGGUGCGGGcuUCG- -5' |
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26463 | 3' | -56.4 | NC_005357.1 | + | 15376 | 0.75 | 0.170588 |
Target: 5'- cUCGGUGAGCgcGUCCGCGUgCGGgccGGCg -3' miRNA: 3'- aAGCCGCUUGa-CAGGUGCGgGCU---UCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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