miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26464 3' -50.2 NC_005357.1 + 1460 0.78 0.29047
Target:  5'- gACGGCGCgg-UCGGcGGCCUccugGCAGGCCg -3'
miRNA:   3'- -UGCUGCGauaAGUU-CUGGA----CGUUCGG- -5'
26464 3' -50.2 NC_005357.1 + 2051 0.71 0.635784
Target:  5'- gGCGACGauggAUUCAAgGGCCUGU-AGCUu -3'
miRNA:   3'- -UGCUGCga--UAAGUU-CUGGACGuUCGG- -5'
26464 3' -50.2 NC_005357.1 + 2113 0.67 0.860186
Target:  5'- aAUGACGCUGcUUCAAuucauCgUGCAgcAGCCg -3'
miRNA:   3'- -UGCUGCGAU-AAGUUcu---GgACGU--UCGG- -5'
26464 3' -50.2 NC_005357.1 + 6224 0.67 0.842194
Target:  5'- uGCGuuuUGCcuucggcCAGGGCCUGCAcGCCg -3'
miRNA:   3'- -UGCu--GCGauaa---GUUCUGGACGUuCGG- -5'
26464 3' -50.2 NC_005357.1 + 7194 0.67 0.850418
Target:  5'- gGCGACGCUGggcuugccaUCGgacugcgugaugaAGcCCUGCAacuucGGCCa -3'
miRNA:   3'- -UGCUGCGAUa--------AGU-------------UCuGGACGU-----UCGG- -5'
26464 3' -50.2 NC_005357.1 + 8452 0.72 0.554574
Target:  5'- cGCGAUGUcggcgUCGAGgugGCCUGCGAuGCCg -3'
miRNA:   3'- -UGCUGCGaua--AGUUC---UGGACGUU-CGG- -5'
26464 3' -50.2 NC_005357.1 + 9311 0.66 0.877105
Target:  5'- cACGGCGacAUUCAGGGCCUuggguucauggGCGaggauguaGGCCg -3'
miRNA:   3'- -UGCUGCgaUAAGUUCUGGA-----------CGU--------UCGG- -5'
26464 3' -50.2 NC_005357.1 + 9537 0.69 0.726911
Target:  5'- uGCGGCcCUGUUCGGccagugcGAUCUGCucGCCg -3'
miRNA:   3'- -UGCUGcGAUAAGUU-------CUGGACGuuCGG- -5'
26464 3' -50.2 NC_005357.1 + 9617 0.71 0.64746
Target:  5'- uCGACGU---UCAGGGCCUuCAAGUCg -3'
miRNA:   3'- uGCUGCGauaAGUUCUGGAcGUUCGG- -5'
26464 3' -50.2 NC_005357.1 + 10897 0.66 0.880355
Target:  5'- -aGGCGCUGUUuccacggcaacacagCGAGGCCcagcaGCAcGCCg -3'
miRNA:   3'- ugCUGCGAUAA---------------GUUCUGGa----CGUuCGG- -5'
26464 3' -50.2 NC_005357.1 + 11273 0.67 0.823208
Target:  5'- uGCGGCGCUGggacgCucGGCCagGUAGGCg -3'
miRNA:   3'- -UGCUGCGAUaa---GuuCUGGa-CGUUCGg -5'
26464 3' -50.2 NC_005357.1 + 11514 0.72 0.589157
Target:  5'- aGCGccuGCGCUGgcgUGAGGcCCUGCGAGCg -3'
miRNA:   3'- -UGC---UGCGAUaa-GUUCU-GGACGUUCGg -5'
26464 3' -50.2 NC_005357.1 + 12682 0.69 0.716741
Target:  5'- -aGGCGCgugUCGAGGCCcGCcuugauAGCCu -3'
miRNA:   3'- ugCUGCGauaAGUUCUGGaCGu-----UCGG- -5'
26464 3' -50.2 NC_005357.1 + 13083 0.69 0.728037
Target:  5'- cCGGCGCgugGUUCGAGgacuugGCCgGCGAccGCCa -3'
miRNA:   3'- uGCUGCGa--UAAGUUC------UGGaCGUU--CGG- -5'
26464 3' -50.2 NC_005357.1 + 13621 0.67 0.83282
Target:  5'- gACGGCGCgcuggcugcUCAAGAUCggcaaccaggGCAAGCg -3'
miRNA:   3'- -UGCUGCGaua------AGUUCUGGa---------CGUUCGg -5'
26464 3' -50.2 NC_005357.1 + 14269 0.7 0.682344
Target:  5'- aACGGCGUgg-UCGAucuGACCaccgGCAAGCUg -3'
miRNA:   3'- -UGCUGCGauaAGUU---CUGGa---CGUUCGG- -5'
26464 3' -50.2 NC_005357.1 + 14970 0.73 0.520612
Target:  5'- gGCGGCGCgcuggCAuaccagcgccaGGGCCUGC-GGCCg -3'
miRNA:   3'- -UGCUGCGauaa-GU-----------UCUGGACGuUCGG- -5'
26464 3' -50.2 NC_005357.1 + 15064 0.66 0.892888
Target:  5'- cCGAaugGCUGgaCGAGugCUGCGaggucGGCCc -3'
miRNA:   3'- uGCUg--CGAUaaGUUCugGACGU-----UCGG- -5'
26464 3' -50.2 NC_005357.1 + 16108 0.67 0.860186
Target:  5'- cGCGguGCGCg--UCAAGACCgUGCcuGUCc -3'
miRNA:   3'- -UGC--UGCGauaAGUUCUGG-ACGuuCGG- -5'
26464 3' -50.2 NC_005357.1 + 16156 0.66 0.900335
Target:  5'- cGCGAUGCg---CGAG-CCgacCAGGCCg -3'
miRNA:   3'- -UGCUGCGauaaGUUCuGGac-GUUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.