Results 41 - 60 of 61 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26464 | 3' | -50.2 | NC_005357.1 | + | 31714 | 0.7 | 0.682344 |
Target: 5'- gACGACGC-AUUCAagcaaucggccgAGGCCgUGCGcgcuGCCg -3' miRNA: 3'- -UGCUGCGaUAAGU------------UCUGG-ACGUu---CGG- -5' |
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26464 | 3' | -50.2 | NC_005357.1 | + | 14269 | 0.7 | 0.682344 |
Target: 5'- aACGGCGUgg-UCGAucuGACCaccgGCAAGCUg -3' miRNA: 3'- -UGCUGCGauaAGUU---CUGGa---CGUUCGG- -5' |
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26464 | 3' | -50.2 | NC_005357.1 | + | 9617 | 0.71 | 0.64746 |
Target: 5'- uCGACGU---UCAGGGCCUuCAAGUCg -3' miRNA: 3'- uGCUGCGauaAGUUCUGGAcGUUCGG- -5' |
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26464 | 3' | -50.2 | NC_005357.1 | + | 2051 | 0.71 | 0.635784 |
Target: 5'- gGCGACGauggAUUCAAgGGCCUGU-AGCUu -3' miRNA: 3'- -UGCUGCga--UAAGUU-CUGGACGuUCGG- -5' |
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26464 | 3' | -50.2 | NC_005357.1 | + | 35371 | 0.71 | 0.635784 |
Target: 5'- aACGACGCUGccgccCGAGGCCaUGCGccuGCUg -3' miRNA: 3'- -UGCUGCGAUaa---GUUCUGG-ACGUu--CGG- -5' |
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26464 | 3' | -50.2 | NC_005357.1 | + | 25799 | 0.71 | 0.624104 |
Target: 5'- cGCGGCGCgcucgGUaUCGuuGAUCUGCAccgGGCCg -3' miRNA: 3'- -UGCUGCGa----UA-AGUu-CUGGACGU---UCGG- -5' |
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26464 | 3' | -50.2 | NC_005357.1 | + | 35154 | 0.71 | 0.620601 |
Target: 5'- uACGGCcccgaggccaagcaGCaGUUCAAGACCUGgGcGGCCg -3' miRNA: 3'- -UGCUG--------------CGaUAAGUUCUGGACgU-UCGG- -5' |
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26464 | 3' | -50.2 | NC_005357.1 | + | 31921 | 0.71 | 0.60078 |
Target: 5'- uGCGGCGU--UUCGAGGCCUGCucgacacGCa -3' miRNA: 3'- -UGCUGCGauAAGUUCUGGACGuu-----CGg -5' |
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26464 | 3' | -50.2 | NC_005357.1 | + | 11514 | 0.72 | 0.589157 |
Target: 5'- aGCGccuGCGCUGgcgUGAGGcCCUGCGAGCg -3' miRNA: 3'- -UGC---UGCGAUaa-GUUCU-GGACGUUCGg -5' |
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26464 | 3' | -50.2 | NC_005357.1 | + | 8452 | 0.72 | 0.554574 |
Target: 5'- cGCGAUGUcggcgUCGAGgugGCCUGCGAuGCCg -3' miRNA: 3'- -UGCUGCGaua--AGUUC---UGGACGUU-CGG- -5' |
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26464 | 3' | -50.2 | NC_005357.1 | + | 14970 | 0.73 | 0.520612 |
Target: 5'- gGCGGCGCgcuggCAuaccagcgccaGGGCCUGC-GGCCg -3' miRNA: 3'- -UGCUGCGauaa-GU-----------UCUGGACGuUCGG- -5' |
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26464 | 3' | -50.2 | NC_005357.1 | + | 41298 | 0.73 | 0.498427 |
Target: 5'- aACGGCcGCUGcUCAuGAUCgacgGCAAGCCu -3' miRNA: 3'- -UGCUG-CGAUaAGUuCUGGa---CGUUCGG- -5' |
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26464 | 3' | -50.2 | NC_005357.1 | + | 37159 | 0.74 | 0.480988 |
Target: 5'- uCGACGCUGgaaCGAcgcauugccgaccccGACCUGCcGGCCg -3' miRNA: 3'- uGCUGCGAUaa-GUU---------------CUGGACGuUCGG- -5' |
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26464 | 3' | -50.2 | NC_005357.1 | + | 35076 | 0.74 | 0.476675 |
Target: 5'- aACGACGCcgaggUCGAGGCC-GCGcucaaGGCCa -3' miRNA: 3'- -UGCUGCGaua--AGUUCUGGaCGU-----UCGG- -5' |
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26464 | 3' | -50.2 | NC_005357.1 | + | 40771 | 0.74 | 0.444961 |
Target: 5'- cGCGAgGUg---CAAGACCUGCuacuggAAGCCa -3' miRNA: 3'- -UGCUgCGauaaGUUCUGGACG------UUCGG- -5' |
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26464 | 3' | -50.2 | NC_005357.1 | + | 34467 | 0.74 | 0.444961 |
Target: 5'- cACGAUGCgcgcCGAGGCCacggGCAAGCUg -3' miRNA: 3'- -UGCUGCGauaaGUUCUGGa---CGUUCGG- -5' |
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26464 | 3' | -50.2 | NC_005357.1 | + | 35635 | 0.74 | 0.434654 |
Target: 5'- aGCGAUGCgcaagUCAAGGCgCUGaacCAGGCCa -3' miRNA: 3'- -UGCUGCGaua--AGUUCUG-GAC---GUUCGG- -5' |
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26464 | 3' | -50.2 | NC_005357.1 | + | 30395 | 0.76 | 0.357499 |
Target: 5'- gAC-ACGCUGggCAAGACCUcGCcGGCCa -3' miRNA: 3'- -UGcUGCGAUaaGUUCUGGA-CGuUCGG- -5' |
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26464 | 3' | -50.2 | NC_005357.1 | + | 26601 | 0.77 | 0.321851 |
Target: 5'- gACGGCG-UGUUCGAGuCCUGCGcggugguGGCCg -3' miRNA: 3'- -UGCUGCgAUAAGUUCuGGACGU-------UCGG- -5' |
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26464 | 3' | -50.2 | NC_005357.1 | + | 1460 | 0.78 | 0.29047 |
Target: 5'- gACGGCGCgg-UCGGcGGCCUccugGCAGGCCg -3' miRNA: 3'- -UGCUGCGauaAGUU-CUGGA----CGUUCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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