miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26464 5' -52.6 NC_005357.1 + 2233 0.67 0.707308
Target:  5'- cGCGcaGCAggcgGCGcGUGGCcGCGCAAUGa- -3'
miRNA:   3'- -CGC--UGUa---CGU-CACCGaCGUGUUACgu -5'
26464 5' -52.6 NC_005357.1 + 5635 0.7 0.512345
Target:  5'- cGCGGCGcagcuUGCuGGUGGCUGgACGcgguuUGCAg -3'
miRNA:   3'- -CGCUGU-----ACG-UCACCGACgUGUu----ACGU- -5'
26464 5' -52.6 NC_005357.1 + 7123 0.68 0.603314
Target:  5'- uGCGugAUGCccAGcGGUUGCAUAAggGCGc -3'
miRNA:   3'- -CGCugUACG--UCaCCGACGUGUUa-CGU- -5'
26464 5' -52.6 NC_005357.1 + 9016 0.67 0.67292
Target:  5'- cGCGAUAgccaGCGGUGGCcgUGcCGCGAUaGCc -3'
miRNA:   3'- -CGCUGUa---CGUCACCG--AC-GUGUUA-CGu -5'
26464 5' -52.6 NC_005357.1 + 9064 0.67 0.67292
Target:  5'- cGCGAUAgccaGCGGUGGCcgUGcCGCGAUaGCc -3'
miRNA:   3'- -CGCUGUa---CGUCACCG--AC-GUGUUA-CGu -5'
26464 5' -52.6 NC_005357.1 + 9112 0.67 0.67292
Target:  5'- cGCGAUAgccaGCGGUGGCcgUGcCGCGAUaGCc -3'
miRNA:   3'- -CGCUGUa---CGUCACCG--AC-GUGUUA-CGu -5'
26464 5' -52.6 NC_005357.1 + 9160 0.67 0.67292
Target:  5'- cGCGAUAgccaGCGGUGGCcgUGcCGCGAUaGCc -3'
miRNA:   3'- -CGCUGUa---CGUCACCG--AC-GUGUUA-CGu -5'
26464 5' -52.6 NC_005357.1 + 9208 0.67 0.67292
Target:  5'- cGCGAUAgccaGCGGUGGCcgUGcCGCGAUaGCc -3'
miRNA:   3'- -CGCUGUa---CGUCACCG--AC-GUGUUA-CGu -5'
26464 5' -52.6 NC_005357.1 + 12421 0.71 0.447975
Target:  5'- cGCGGCcGUGCAGUuGgaGCACGAUGg- -3'
miRNA:   3'- -CGCUG-UACGUCAcCgaCGUGUUACgu -5'
26464 5' -52.6 NC_005357.1 + 14539 0.66 0.718624
Target:  5'- cGCGACGUGCuG-GGCgaGCACGccaagaugGCGa -3'
miRNA:   3'- -CGCUGUACGuCaCCGa-CGUGUua------CGU- -5'
26464 5' -52.6 NC_005357.1 + 14631 0.73 0.334164
Target:  5'- -gGACGUGCuGcGGCUGCGCGGcGCGc -3'
miRNA:   3'- cgCUGUACGuCaCCGACGUGUUaCGU- -5'
26464 5' -52.6 NC_005357.1 + 14958 0.74 0.293402
Target:  5'- cGCGugGUGC-GUGGCgGCGCGcugGCAu -3'
miRNA:   3'- -CGCugUACGuCACCGaCGUGUua-CGU- -5'
26464 5' -52.6 NC_005357.1 + 16502 0.68 0.626526
Target:  5'- gGCGACAUGCuG-GGCcacCGCAAgcUGCAa -3'
miRNA:   3'- -CGCUGUACGuCaCCGac-GUGUU--ACGU- -5'
26464 5' -52.6 NC_005357.1 + 18050 0.72 0.407639
Target:  5'- aGCGAguUGUGGUGGCgaaUGCGCGAaGCc -3'
miRNA:   3'- -CGCUguACGUCACCG---ACGUGUUaCGu -5'
26464 5' -52.6 NC_005357.1 + 21189 0.68 0.614911
Target:  5'- cGCGGCcUGCuGcUGGuCUGCGCGuUGCu -3'
miRNA:   3'- -CGCUGuACGuC-ACC-GACGUGUuACGu -5'
26464 5' -52.6 NC_005357.1 + 25597 0.68 0.649759
Target:  5'- uGCGGCccagGCAGUGGCaaccacggcgGCGCGGUcGCc -3'
miRNA:   3'- -CGCUGua--CGUCACCGa---------CGUGUUA-CGu -5'
26464 5' -52.6 NC_005357.1 + 26139 0.68 0.649759
Target:  5'- cGCGGCAgauuuggcGCAGcGGCUcGCcgucuGCGAUGCGg -3'
miRNA:   3'- -CGCUGUa-------CGUCaCCGA-CG-----UGUUACGU- -5'
26464 5' -52.6 NC_005357.1 + 26990 0.66 0.718624
Target:  5'- cGCGucaagaacaucaACAaGCuGUGGUUGCGC-GUGCAu -3'
miRNA:   3'- -CGC------------UGUaCGuCACCGACGUGuUACGU- -5'
26464 5' -52.6 NC_005357.1 + 33041 1.11 0.000757
Target:  5'- cGCGACAUGCAGUGGCUGCACAAUGCAc -3'
miRNA:   3'- -CGCUGUACGUCACCGACGUGUUACGU- -5'
26464 5' -52.6 NC_005357.1 + 33759 0.68 0.638146
Target:  5'- gGCGGCGcaGCAGccGCUGCACAcaGCGa -3'
miRNA:   3'- -CGCUGUa-CGUCacCGACGUGUuaCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.