miRNA display CGI


Results 21 - 26 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26464 5' -52.6 NC_005357.1 + 18050 0.72 0.407639
Target:  5'- aGCGAguUGUGGUGGCgaaUGCGCGAaGCc -3'
miRNA:   3'- -CGCUguACGUCACCG---ACGUGUUaCGu -5'
26464 5' -52.6 NC_005357.1 + 37254 0.73 0.369654
Target:  5'- aCGACGUGCAGgcGGUgGCagGCAAUGCGg -3'
miRNA:   3'- cGCUGUACGUCa-CCGaCG--UGUUACGU- -5'
26464 5' -52.6 NC_005357.1 + 14631 0.73 0.334164
Target:  5'- -gGACGUGCuGcGGCUGCGCGGcGCGc -3'
miRNA:   3'- cgCUGUACGuCaCCGACGUGUUaCGU- -5'
26464 5' -52.6 NC_005357.1 + 14958 0.74 0.293402
Target:  5'- cGCGugGUGC-GUGGCgGCGCGcugGCAu -3'
miRNA:   3'- -CGCugUACGuCACCGaCGUGUua-CGU- -5'
26464 5' -52.6 NC_005357.1 + 35961 0.77 0.183718
Target:  5'- cGCGGCGUGCAGUucCUGCGCGAcgGCGa -3'
miRNA:   3'- -CGCUGUACGUCAccGACGUGUUa-CGU- -5'
26464 5' -52.6 NC_005357.1 + 33041 1.11 0.000757
Target:  5'- cGCGACAUGCAGUGGCUGCACAAUGCAc -3'
miRNA:   3'- -CGCUGUACGUCACCGACGUGUUACGU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.