miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26465 5' -56.8 NC_005357.1 + 12965 0.66 0.545871
Target:  5'- -gGCCGCgcgcucgUCGCCugGuGCcaGGAGCAc -3'
miRNA:   3'- uaCGGUGaca----AGCGGugC-CG--CCUUGU- -5'
26465 5' -56.8 NC_005357.1 + 33873 0.66 0.534948
Target:  5'- cUGUCGCUGccCGCCAuCGGCGcGGCu -3'
miRNA:   3'- uACGGUGACaaGCGGU-GCCGCcUUGu -5'
26465 5' -56.8 NC_005357.1 + 25751 0.66 0.534948
Target:  5'- -aGCaCGCUGggcgCGCUgcuggGCGGCGGcAACGa -3'
miRNA:   3'- uaCG-GUGACaa--GCGG-----UGCCGCC-UUGU- -5'
26465 5' -56.8 NC_005357.1 + 10979 0.66 0.524103
Target:  5'- -gGCCAcCUGUUCgGCCA-GGcCGGAuuGCAu -3'
miRNA:   3'- uaCGGU-GACAAG-CGGUgCC-GCCU--UGU- -5'
26465 5' -56.8 NC_005357.1 + 34511 0.67 0.481637
Target:  5'- -cGCCGgUGUUCGCCcuCGGCaagaugGGAGgCAa -3'
miRNA:   3'- uaCGGUgACAAGCGGu-GCCG------CCUU-GU- -5'
26465 5' -56.8 NC_005357.1 + 32930 0.67 0.471279
Target:  5'- -gGCUGCUGUUCgGCCAgGGCGaccACGg -3'
miRNA:   3'- uaCGGUGACAAG-CGGUgCCGCcu-UGU- -5'
26465 5' -56.8 NC_005357.1 + 26117 0.67 0.471279
Target:  5'- -cGCCAUgccggcaugUGUUCGUCGCGGCaGAuuuggcGCAg -3'
miRNA:   3'- uaCGGUG---------ACAAGCGGUGCCGcCU------UGU- -5'
26465 5' -56.8 NC_005357.1 + 24954 0.67 0.44091
Target:  5'- -cGCCGCUGUUCgugcagGCCcUGGCGuGGCAc -3'
miRNA:   3'- uaCGGUGACAAG------CGGuGCCGCcUUGU- -5'
26465 5' -56.8 NC_005357.1 + 40450 0.68 0.421292
Target:  5'- -aGCCACUGgcagguggCGCC-CGuaucGCGGGGCAu -3'
miRNA:   3'- uaCGGUGACaa------GCGGuGC----CGCCUUGU- -5'
26465 5' -56.8 NC_005357.1 + 38381 0.68 0.402209
Target:  5'- -gGCCGCUGgccugccgcUCGCCGCGGcCGGc--- -3'
miRNA:   3'- uaCGGUGACa--------AGCGGUGCC-GCCuugu -5'
26465 5' -56.8 NC_005357.1 + 41133 0.68 0.383685
Target:  5'- -cGCC-CUGggCGCgGCGGUGuGGGCGg -3'
miRNA:   3'- uaCGGuGACaaGCGgUGCCGC-CUUGU- -5'
26465 5' -56.8 NC_005357.1 + 11845 0.69 0.348374
Target:  5'- -cGCCGCgGUUgGCCugGGCG-AACc -3'
miRNA:   3'- uaCGGUGaCAAgCGGugCCGCcUUGu -5'
26465 5' -56.8 NC_005357.1 + 22114 0.69 0.331609
Target:  5'- --cCCACUGUUccagcgCGCCGCGGUcGAACAg -3'
miRNA:   3'- uacGGUGACAA------GCGGUGCCGcCUUGU- -5'
26465 5' -56.8 NC_005357.1 + 22576 0.69 0.331609
Target:  5'- uGUGCCGCUucUCGCCGCGGUu--GCGa -3'
miRNA:   3'- -UACGGUGAcaAGCGGUGCCGccuUGU- -5'
26465 5' -56.8 NC_005357.1 + 9496 0.69 0.331609
Target:  5'- cAUGCCAgcCUGUUcCGCCGUGGC-GAACAg -3'
miRNA:   3'- -UACGGU--GACAA-GCGGUGCCGcCUUGU- -5'
26465 5' -56.8 NC_005357.1 + 489 0.7 0.315444
Target:  5'- gAUGCCucggcagcauACUG--CGCCGCGGCGGcuuGCAg -3'
miRNA:   3'- -UACGG----------UGACaaGCGGUGCCGCCu--UGU- -5'
26465 5' -56.8 NC_005357.1 + 36638 0.7 0.315444
Target:  5'- cUGgCGCUGc-CGCgAUGGCGGGACAc -3'
miRNA:   3'- uACgGUGACaaGCGgUGCCGCCUUGU- -5'
26465 5' -56.8 NC_005357.1 + 16425 0.7 0.307588
Target:  5'- -gGCCGCgggGUaaUCGCCgGCGGCGuuGAACAc -3'
miRNA:   3'- uaCGGUGa--CA--AGCGG-UGCCGC--CUUGU- -5'
26465 5' -56.8 NC_005357.1 + 30670 0.7 0.299882
Target:  5'- -gGCCGCUGggUGUagGCGGCGGGAa- -3'
miRNA:   3'- uaCGGUGACaaGCGg-UGCCGCCUUgu -5'
26465 5' -56.8 NC_005357.1 + 20298 0.72 0.243578
Target:  5'- cGUGCaaagcCUGUUCGaCCGCGGCgcgcuGGAACAg -3'
miRNA:   3'- -UACGgu---GACAAGC-GGUGCCG-----CCUUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.