miRNA display CGI


Results 21 - 40 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26466 3' -60.7 NC_005357.1 + 17265 0.71 0.172858
Target:  5'- cCGCCgACCACGAGCgagggccGGUggguuaucgacuucuUCGCcCCGUGg -3'
miRNA:   3'- -GCGGgUGGUGCUCG-------UCA---------------AGCG-GGCGC- -5'
26466 3' -60.7 NC_005357.1 + 27384 0.66 0.364135
Target:  5'- uGCCCGCaucaaCGCGGGCA--UCGCCaacaccaaCGCGg -3'
miRNA:   3'- gCGGGUG-----GUGCUCGUcaAGCGG--------GCGC- -5'
26466 3' -60.7 NC_005357.1 + 6991 0.67 0.33946
Target:  5'- gGCUuucaCACgCGCGAGCGGgUCGgCUCGCGu -3'
miRNA:   3'- gCGG----GUG-GUGCUCGUCaAGC-GGGCGC- -5'
26466 3' -60.7 NC_005357.1 + 18759 0.72 0.158274
Target:  5'- gGCCCgaccgagggucGCCugGuGCAGUUgcUGCCCGCc -3'
miRNA:   3'- gCGGG-----------UGGugCuCGUCAA--GCGGGCGc -5'
26466 3' -60.7 NC_005357.1 + 16167 0.66 0.398916
Target:  5'- aGCCgACCAgGccGGCGGgu-GCCCGUGc -3'
miRNA:   3'- gCGGgUGGUgC--UCGUCaagCGGGCGC- -5'
26466 3' -60.7 NC_005357.1 + 16357 0.73 0.125366
Target:  5'- gGCCCGCCcCGAGUucgccgagcgcauggAGcgCGCCCGCc -3'
miRNA:   3'- gCGGGUGGuGCUCG---------------UCaaGCGGGCGc -5'
26466 3' -60.7 NC_005357.1 + 14605 0.76 0.071064
Target:  5'- gGCgCCACCGCGGGCAG--CGCgCGCGa -3'
miRNA:   3'- gCG-GGUGGUGCUCGUCaaGCGgGCGC- -5'
26466 3' -60.7 NC_005357.1 + 25642 0.68 0.272862
Target:  5'- gCGUCCACCuCG-GCgAGUUCuGCCgGCGu -3'
miRNA:   3'- -GCGGGUGGuGCuCG-UCAAG-CGGgCGC- -5'
26466 3' -60.7 NC_005357.1 + 37820 0.66 0.355774
Target:  5'- cCGCCgacaucauCGCCGaggcCGAGCAGUuccUCGCCUgGCGc -3'
miRNA:   3'- -GCGG--------GUGGU----GCUCGUCA---AGCGGG-CGC- -5'
26466 3' -60.7 NC_005357.1 + 11491 0.67 0.347549
Target:  5'- uCGCCugcgaCACCGCaaaGGGCAG--CGCCUGCGc -3'
miRNA:   3'- -GCGG-----GUGGUG---CUCGUCaaGCGGGCGC- -5'
26466 3' -60.7 NC_005357.1 + 35989 0.68 0.301086
Target:  5'- aCGCCU-UCGCGGGCGGUggugUCGCgaGCGa -3'
miRNA:   3'- -GCGGGuGGUGCUCGUCA----AGCGggCGC- -5'
26466 3' -60.7 NC_005357.1 + 11241 0.68 0.301086
Target:  5'- aCGCCCACUAgCGuGGCgaugagGGUUUGCgCUGCGg -3'
miRNA:   3'- -GCGGGUGGU-GC-UCG------UCAAGCG-GGCGC- -5'
26466 3' -60.7 NC_005357.1 + 26430 0.68 0.301086
Target:  5'- uGCCCucgACCuCGuGCAGUUCGCggaUGCGc -3'
miRNA:   3'- gCGGG---UGGuGCuCGUCAAGCGg--GCGC- -5'
26466 3' -60.7 NC_005357.1 + 24774 0.68 0.301086
Target:  5'- uGaCCUGCCACGGGUcGUccUCgauGCCCGCGu -3'
miRNA:   3'- gC-GGGUGGUGCUCGuCA--AG---CGGGCGC- -5'
26466 3' -60.7 NC_005357.1 + 13495 0.71 0.192637
Target:  5'- uGCCgACCGCGccuuugggcgagguaAGCGGUUugcCGUCCGCGc -3'
miRNA:   3'- gCGGgUGGUGC---------------UCGUCAA---GCGGGCGC- -5'
26466 3' -60.7 NC_005357.1 + 5535 0.67 0.331509
Target:  5'- cCGCCCAgguuCCGCc--CAGgUCGCCCGCc -3'
miRNA:   3'- -GCGGGU----GGUGcucGUCaAGCGGGCGc -5'
26466 3' -60.7 NC_005357.1 + 25057 0.67 0.331509
Target:  5'- cCGCCguUACCAuCGGGCAGcaUCGCCacccaGCGc -3'
miRNA:   3'- -GCGG--GUGGU-GCUCGUCa-AGCGGg----CGC- -5'
26466 3' -60.7 NC_005357.1 + 17420 0.67 0.33946
Target:  5'- gCGCCCAcgucgcCCuuGAGCAGUggcCCCGCc -3'
miRNA:   3'- -GCGGGU------GGugCUCGUCAagcGGGCGc -5'
26466 3' -60.7 NC_005357.1 + 39607 0.67 0.33946
Target:  5'- gCGCgUgGCCGCGAGCAccUgGCCCGaCGa -3'
miRNA:   3'- -GCG-GgUGGUGCUCGUcaAgCGGGC-GC- -5'
26466 3' -60.7 NC_005357.1 + 26737 0.67 0.347549
Target:  5'- gGgCCACCGCcAGCg---CGCCCGCu -3'
miRNA:   3'- gCgGGUGGUGcUCGucaaGCGGGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.