miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26466 3' -60.7 NC_005357.1 + 32692 1.09 0.000231
Target:  5'- gCGCCCACCACGAGCAGUUCGCCCGCGg -3'
miRNA:   3'- -GCGGGUGGUGCUCGUCAAGCGGGCGC- -5'
26466 3' -60.7 NC_005357.1 + 8400 0.77 0.068891
Target:  5'- cCGCCCACgugucgggcaGCGAGCAGUUCGCgggggcgUCGCGg -3'
miRNA:   3'- -GCGGGUGg---------UGCUCGUCAAGCG-------GGCGC- -5'
26466 3' -60.7 NC_005357.1 + 14605 0.76 0.071064
Target:  5'- gGCgCCACCGCGGGCAG--CGCgCGCGa -3'
miRNA:   3'- gCG-GGUGGUGCUCGUCaaGCGgGCGC- -5'
26466 3' -60.7 NC_005357.1 + 32672 0.74 0.105117
Target:  5'- uGCCCgacgugaaGCC-CGAGCAGUUCGCCgaCGUGc -3'
miRNA:   3'- gCGGG--------UGGuGCUCGUCAAGCGG--GCGC- -5'
26466 3' -60.7 NC_005357.1 + 16357 0.73 0.125366
Target:  5'- gGCCCGCCcCGAGUucgccgagcgcauggAGcgCGCCCGCc -3'
miRNA:   3'- gCGGGUGGuGCUCG---------------UCaaGCGGGCGc -5'
26466 3' -60.7 NC_005357.1 + 2367 0.73 0.130966
Target:  5'- uCGgCCugCACGuGGCAGa-CGCCCGCGu -3'
miRNA:   3'- -GCgGGugGUGC-UCGUCaaGCGGGCGC- -5'
26466 3' -60.7 NC_005357.1 + 24673 0.73 0.130966
Target:  5'- gCGCCCGCCGCGGGCcacGUccaCGCCCagGCu -3'
miRNA:   3'- -GCGGGUGGUGCUCGu--CAa--GCGGG--CGc -5'
26466 3' -60.7 NC_005357.1 + 18759 0.72 0.158274
Target:  5'- gGCCCgaccgagggucGCCugGuGCAGUUgcUGCCCGCc -3'
miRNA:   3'- gCGGG-----------UGGugCuCGUCAA--GCGGGCGc -5'
26466 3' -60.7 NC_005357.1 + 17265 0.71 0.172858
Target:  5'- cCGCCgACCACGAGCgagggccGGUggguuaucgacuucuUCGCcCCGUGg -3'
miRNA:   3'- -GCGGgUGGUGCUCG-------UCA---------------AGCG-GGCGC- -5'
26466 3' -60.7 NC_005357.1 + 35420 0.71 0.180829
Target:  5'- aCGCCCAUCacGCGAGCcGaccCGCUCGCGc -3'
miRNA:   3'- -GCGGGUGG--UGCUCGuCaa-GCGGGCGC- -5'
26466 3' -60.7 NC_005357.1 + 37908 0.71 0.180829
Target:  5'- cCGCCCAgcacgccacgUCACGGGCGc--CGCCCGUGa -3'
miRNA:   3'- -GCGGGU----------GGUGCUCGUcaaGCGGGCGC- -5'
26466 3' -60.7 NC_005357.1 + 14368 0.71 0.185669
Target:  5'- uGCCCGCUguuCGAGCAGaccgUCGCCgaCGUGu -3'
miRNA:   3'- gCGGGUGGu--GCUCGUCa---AGCGG--GCGC- -5'
26466 3' -60.7 NC_005357.1 + 12667 0.71 0.190623
Target:  5'- uCGCCCAUCAUGcGCAGgcgcgugUCgagGCCCGCc -3'
miRNA:   3'- -GCGGGUGGUGCuCGUCa------AG---CGGGCGc -5'
26466 3' -60.7 NC_005357.1 + 13495 0.71 0.192637
Target:  5'- uGCCgACCGCGccuuugggcgagguaAGCGGUUugcCGUCCGCGc -3'
miRNA:   3'- gCGGgUGGUGC---------------UCGUCAA---GCGGGCGC- -5'
26466 3' -60.7 NC_005357.1 + 33896 0.7 0.20088
Target:  5'- gGCCUgcgauACCugG-GCaAGUUCGCCgGCGa -3'
miRNA:   3'- gCGGG-----UGGugCuCG-UCAAGCGGgCGC- -5'
26466 3' -60.7 NC_005357.1 + 5603 0.7 0.206186
Target:  5'- gGCCCACUcgGCGGGguGcguUUCGCgCGUGg -3'
miRNA:   3'- gCGGGUGG--UGCUCguC---AAGCGgGCGC- -5'
26466 3' -60.7 NC_005357.1 + 40431 0.7 0.209972
Target:  5'- gCGCCUgggccucaagaucaGCCACuGGCAGguggCGCCCGUa -3'
miRNA:   3'- -GCGGG--------------UGGUGcUCGUCaa--GCGGGCGc -5'
26466 3' -60.7 NC_005357.1 + 27522 0.7 0.211613
Target:  5'- gGCCgGCCAgcAGCAGaUCGCCgCGCa -3'
miRNA:   3'- gCGGgUGGUgcUCGUCaAGCGG-GCGc -5'
26466 3' -60.7 NC_005357.1 + 32872 0.69 0.243075
Target:  5'- uGCUCGCCaccgGCGAGCAGaUCGCacuggccgaacagggCCGCa -3'
miRNA:   3'- gCGGGUGG----UGCUCGUCaAGCG---------------GGCGc -5'
26466 3' -60.7 NC_005357.1 + 26277 0.68 0.266146
Target:  5'- aCGCCCACCACcaucAGCGug-CGgCCGCa -3'
miRNA:   3'- -GCGGGUGGUGc---UCGUcaaGCgGGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.