miRNA display CGI


Results 21 - 40 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26467 3' -58.5 NC_005357.1 + 12677 0.67 0.370355
Target:  5'- cUGGC-AGCAGcCGAGGCcgaguucuacGGCGugGCc -3'
miRNA:   3'- aACCGcUCGUC-GUUCCG----------CUGCugCGu -5'
26467 3' -58.5 NC_005357.1 + 17955 0.67 0.370355
Target:  5'- cUGGCGcaggcaAGCAGCAGGuCGuCGGCGUc -3'
miRNA:   3'- aACCGC------UCGUCGUUCcGCuGCUGCGu -5'
26467 3' -58.5 NC_005357.1 + 16179 0.67 0.379282
Target:  5'- -cGGCGGGUgcccguGCcuucGGCGACGcGCGCAa -3'
miRNA:   3'- aaCCGCUCGu-----CGuu--CCGCUGC-UGCGU- -5'
26467 3' -58.5 NC_005357.1 + 8417 0.67 0.388351
Target:  5'- --aGCGAGCAGUucgcgGGGGCGucgcggaacauCGGCGCGa -3'
miRNA:   3'- aacCGCUCGUCG-----UUCCGCu----------GCUGCGU- -5'
26467 3' -58.5 NC_005357.1 + 13558 0.66 0.397562
Target:  5'- --cGCcAGCAGCGAGGaCGugG-CGCGg -3'
miRNA:   3'- aacCGcUCGUCGUUCC-GCugCuGCGU- -5'
26467 3' -58.5 NC_005357.1 + 10859 0.66 0.413539
Target:  5'- -aGGCGAGCAGCcaAAGgagcacgccuucccGCGAaccgaGGCGCu -3'
miRNA:   3'- aaCCGCUCGUCG--UUC--------------CGCUg----CUGCGu -5'
26467 3' -58.5 NC_005357.1 + 13527 0.66 0.416399
Target:  5'- -gGGaCGAGUGGUc-GGCGACGGCcaGCAa -3'
miRNA:   3'- aaCC-GCUCGUCGuuCCGCUGCUG--CGU- -5'
26467 3' -58.5 NC_005357.1 + 22258 0.66 0.416399
Target:  5'- -aGGCGaAGCcGCAAGGCGcaccCGA-GCAa -3'
miRNA:   3'- aaCCGC-UCGuCGUUCCGCu---GCUgCGU- -5'
26467 3' -58.5 NC_005357.1 + 24998 0.66 0.435771
Target:  5'- cUGGCgGGGCcacuGCucaAGGGCGACGugGg- -3'
miRNA:   3'- aACCG-CUCGu---CG---UUCCGCUGCugCgu -5'
26467 3' -58.5 NC_005357.1 + 31696 1.05 0.00048
Target:  5'- cUUGGCGAGCAGCAAGGCGACGACGCAu -3'
miRNA:   3'- -AACCGCUCGUCGUUCCGCUGCUGCGU- -5'
26467 3' -58.5 NC_005357.1 + 16238 0.71 0.1842
Target:  5'- -cGGUGAGCGGCAcgauauGGCGgAUGGCGUu -3'
miRNA:   3'- aaCCGCUCGUCGUu-----CCGC-UGCUGCGu -5'
26467 3' -58.5 NC_005357.1 + 24315 0.73 0.147546
Target:  5'- -cGGCGAGCAGCcgcgggucAGGCGgcagaGCGAUGCc -3'
miRNA:   3'- aaCCGCUCGUCGu-------UCCGC-----UGCUGCGu -5'
26467 3' -58.5 NC_005357.1 + 31111 0.71 0.1842
Target:  5'- -cGGCGAGUggugcgagauAGCGGGgacuuuucagcGCGACGACGCu -3'
miRNA:   3'- aaCCGCUCG----------UCGUUC-----------CGCUGCUGCGu -5'
26467 3' -58.5 NC_005357.1 + 34044 0.7 0.219101
Target:  5'- --cGUGGGCGGCGauucucgaagauucgAGcGCGGCGGCGCAg -3'
miRNA:   3'- aacCGCUCGUCGU---------------UC-CGCUGCUGCGU- -5'
26467 3' -58.5 NC_005357.1 + 23655 0.7 0.222648
Target:  5'- -cGGCGGGCAGCAacugcaccAGGCGACccuCGg- -3'
miRNA:   3'- aaCCGCUCGUCGU--------UCCGCUGcu-GCgu -5'
26467 3' -58.5 NC_005357.1 + 24550 0.7 0.228668
Target:  5'- gUGGuCGcGCAGCGcGGCGAUGGCGa- -3'
miRNA:   3'- aACC-GCuCGUCGUuCCGCUGCUGCgu -5'
26467 3' -58.5 NC_005357.1 + 37071 0.7 0.234824
Target:  5'- -gGGCGcGguGC-AGGCGGCcACGCAg -3'
miRNA:   3'- aaCCGCuCguCGuUCCGCUGcUGCGU- -5'
26467 3' -58.5 NC_005357.1 + 25771 0.7 0.247555
Target:  5'- -gGGCG-GCGGCAAcgauGGCcGCGAUGCGc -3'
miRNA:   3'- aaCCGCuCGUCGUU----CCGcUGCUGCGU- -5'
26467 3' -58.5 NC_005357.1 + 23578 0.69 0.274724
Target:  5'- -gGuGCGGGCGG-GGGGCGACGAUGg- -3'
miRNA:   3'- aaC-CGCUCGUCgUUCCGCUGCUGCgu -5'
26467 3' -58.5 NC_005357.1 + 23519 0.69 0.289181
Target:  5'- --cGCGAGCGcGCcuuccAGGCGGCGcACGCGg -3'
miRNA:   3'- aacCGCUCGU-CGu----UCCGCUGC-UGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.