miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26468 5' -53.6 NC_005357.1 + 40899 0.66 0.759921
Target:  5'- cCAAGGCCGAacuGCUGGGcgcgaauaAGGGggC-GCCa -3'
miRNA:   3'- -GUUCUGGCU---CGGCCU--------UCCUaaGuCGG- -5'
26468 5' -53.6 NC_005357.1 + 36259 0.66 0.759921
Target:  5'- gCAAGACCGGccugcGCUGGGAaGAUgacggCGGCg -3'
miRNA:   3'- -GUUCUGGCU-----CGGCCUUcCUAa----GUCGg -5'
26468 5' -53.6 NC_005357.1 + 4356 0.66 0.759921
Target:  5'- gAGGaAUCG-GCCGGAcggcaggcGGAUgcgCAGCCa -3'
miRNA:   3'- gUUC-UGGCuCGGCCUu-------CCUAa--GUCGG- -5'
26468 5' -53.6 NC_005357.1 + 22978 0.66 0.749306
Target:  5'- -----gCGucAGCCGGucGGAUUCGGCUu -3'
miRNA:   3'- guucugGC--UCGGCCuuCCUAAGUCGG- -5'
26468 5' -53.6 NC_005357.1 + 34058 0.66 0.749306
Target:  5'- gCGAGGCCggguucGAGCCGGAcaucc-CGGCCg -3'
miRNA:   3'- -GUUCUGG------CUCGGCCUuccuaaGUCGG- -5'
26468 5' -53.6 NC_005357.1 + 29636 0.66 0.738565
Target:  5'- --uGGCCGGGCUuGAugGGGAUgaugaggUAGCCg -3'
miRNA:   3'- guuCUGGCUCGGcCU--UCCUAa------GUCGG- -5'
26468 5' -53.6 NC_005357.1 + 889 0.67 0.683406
Target:  5'- gCAGGGCC-AGCaUGGuGGGGUUCaucccGGCCg -3'
miRNA:   3'- -GUUCUGGcUCG-GCCuUCCUAAG-----UCGG- -5'
26468 5' -53.6 NC_005357.1 + 14916 0.67 0.683406
Target:  5'- --cGACCGcGCCGaGAAGcuggCGGCCg -3'
miRNA:   3'- guuCUGGCuCGGC-CUUCcuaaGUCGG- -5'
26468 5' -53.6 NC_005357.1 + 6363 0.67 0.682285
Target:  5'- gAAGGCCGGggcGCUGGGuuacaccAGG--UCGGCCg -3'
miRNA:   3'- gUUCUGGCU---CGGCCU-------UCCuaAGUCGG- -5'
26468 5' -53.6 NC_005357.1 + 17695 0.67 0.67217
Target:  5'- uCGAGGCCGcgcaGGCgCGGu-GGAagCGGCCc -3'
miRNA:   3'- -GUUCUGGC----UCG-GCCuuCCUaaGUCGG- -5'
26468 5' -53.6 NC_005357.1 + 35842 0.67 0.660893
Target:  5'- aAAGACCGcagcccccuGGCCGaGgcGGAUggcaAGCCc -3'
miRNA:   3'- gUUCUGGC---------UCGGC-CuuCCUAag--UCGG- -5'
26468 5' -53.6 NC_005357.1 + 23575 0.68 0.593028
Target:  5'- gCAGGugCGGGCgGGggGcGAcgaUGGCCg -3'
miRNA:   3'- -GUUCugGCUCGgCCuuC-CUaa-GUCGG- -5'
26468 5' -53.6 NC_005357.1 + 4059 0.69 0.581781
Target:  5'- -cAGGCCagcGGCCcaGGggGGAUUggUAGCCa -3'
miRNA:   3'- guUCUGGc--UCGG--CCuuCCUAA--GUCGG- -5'
26468 5' -53.6 NC_005357.1 + 14669 0.69 0.559429
Target:  5'- --uGuCCGAGCCGGAcgAGGg--CAGCg -3'
miRNA:   3'- guuCuGGCUCGGCCU--UCCuaaGUCGg -5'
26468 5' -53.6 NC_005357.1 + 25346 0.7 0.501552
Target:  5'- cCGAGaACCGcGCCGGcuucgccuucgugcGcgaggugaAGGAUUCGGCCa -3'
miRNA:   3'- -GUUC-UGGCuCGGCC--------------U--------UCCUAAGUCGG- -5'
26468 5' -53.6 NC_005357.1 + 39394 0.7 0.494097
Target:  5'- cCAGGAUgGAGCagcacuGGAAGGAcgagCAGCUa -3'
miRNA:   3'- -GUUCUGgCUCGg-----CCUUCCUaa--GUCGG- -5'
26468 5' -53.6 NC_005357.1 + 3235 0.7 0.483535
Target:  5'- -cGGACCGucauacuaAGCCcccGGcGGGAUUCAGCUu -3'
miRNA:   3'- guUCUGGC--------UCGG---CCuUCCUAAGUCGG- -5'
26468 5' -53.6 NC_005357.1 + 13856 0.73 0.34054
Target:  5'- ---cGCCu-GCCGGAAGGuUUCGGCCu -3'
miRNA:   3'- guucUGGcuCGGCCUUCCuAAGUCGG- -5'
26468 5' -53.6 NC_005357.1 + 31604 1.12 0.000627
Target:  5'- uCAAGACCGAGCCGGAAGGAUUCAGCCg -3'
miRNA:   3'- -GUUCUGGCUCGGCCUUCCUAAGUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.