miRNA display CGI


Results 61 - 80 of 145 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26469 3' -60.5 NC_005357.1 + 21572 0.68 0.286791
Target:  5'- gGCGCGCGC--CGUcGUGCAGuCGGUCa -3'
miRNA:   3'- -CGCGUGCGuuGCA-CGCGUCcGCCGGg -5'
26469 3' -60.5 NC_005357.1 + 24330 0.68 0.286791
Target:  5'- gGCGCGaa-GGCGUccugguucGCGCcggcuucGGCGGCCCa -3'
miRNA:   3'- -CGCGUgcgUUGCA--------CGCGu------CCGCCGGG- -5'
26469 3' -60.5 NC_005357.1 + 20655 0.68 0.286791
Target:  5'- -gGaCAUcaGCAcCGUGC-CGGGCGGCCUg -3'
miRNA:   3'- cgC-GUG--CGUuGCACGcGUCCGCCGGG- -5'
26469 3' -60.5 NC_005357.1 + 37786 0.68 0.286791
Target:  5'- ---gACGCGAUGgccGaCGCAGcGUGGCCCa -3'
miRNA:   3'- cgcgUGCGUUGCa--C-GCGUC-CGCCGGG- -5'
26469 3' -60.5 NC_005357.1 + 2417 0.68 0.286791
Target:  5'- aGCGUAgGUGuACG-GCaGCAGGCcGGCCUc -3'
miRNA:   3'- -CGCGUgCGU-UGCaCG-CGUCCG-CCGGG- -5'
26469 3' -60.5 NC_005357.1 + 24398 0.68 0.286083
Target:  5'- uCGCuGCGCAA-GUugaagaaGCGCAGcCGGCCCg -3'
miRNA:   3'- cGCG-UGCGUUgCA-------CGCGUCcGCCGGG- -5'
26469 3' -60.5 NC_005357.1 + 1081 0.68 0.284672
Target:  5'- aCGCGCGCGGuagauugccuuggcCGUGuCGCGcGGCaugucgcgcaucGGCCCg -3'
miRNA:   3'- cGCGUGCGUU--------------GCAC-GCGU-CCG------------CCGGG- -5'
26469 3' -60.5 NC_005357.1 + 334 0.68 0.279778
Target:  5'- -gGCugGCGgugGCGUcGCGCagcAGGCcguccgccaGGCCCg -3'
miRNA:   3'- cgCGugCGU---UGCA-CGCG---UCCG---------CCGGG- -5'
26469 3' -60.5 NC_005357.1 + 41137 0.68 0.272902
Target:  5'- cUGgGCGCGGCG-GUGUGGGCGGgCa -3'
miRNA:   3'- cGCgUGCGUUGCaCGCGUCCGCCgGg -5'
26469 3' -60.5 NC_005357.1 + 2828 0.68 0.272902
Target:  5'- gGUGCuCGCGGCcacGCGCA-GCGGCgCCa -3'
miRNA:   3'- -CGCGuGCGUUGca-CGCGUcCGCCG-GG- -5'
26469 3' -60.5 NC_005357.1 + 2466 0.68 0.272902
Target:  5'- uUGCACaaGGCGUGCuGCacaAGGCGGUCUu -3'
miRNA:   3'- cGCGUGcgUUGCACG-CG---UCCGCCGGG- -5'
26469 3' -60.5 NC_005357.1 + 2372 0.68 0.272902
Target:  5'- cUGCACGUGgcagacgcccGCGUGCGUacccuugucaGGGCGGCa- -3'
miRNA:   3'- cGCGUGCGU----------UGCACGCG----------UCCGCCGgg -5'
26469 3' -60.5 NC_005357.1 + 26046 0.68 0.272902
Target:  5'- aGCcCGCGCGGCGggcgcgcuccaUGCGCucggcgaacucgGGGCGGgCCu -3'
miRNA:   3'- -CGcGUGCGUUGC-----------ACGCG------------UCCGCCgGG- -5'
26469 3' -60.5 NC_005357.1 + 19902 0.68 0.271544
Target:  5'- cGCGCGCGCugcGCGUGCucGCugcggggaugauGGCGggcaugaccaGCCCa -3'
miRNA:   3'- -CGCGUGCGu--UGCACG--CGu-----------CCGC----------CGGG- -5'
26469 3' -60.5 NC_005357.1 + 14572 0.68 0.27019
Target:  5'- aGCGCGgacacguucuugaGCAGCG-GCGCGGcCGGCgCCa -3'
miRNA:   3'- -CGCGUg------------CGUUGCaCGCGUCcGCCG-GG- -5'
26469 3' -60.5 NC_005357.1 + 31299 0.68 0.266163
Target:  5'- aGC-CugGCGACc-GCGU-GGUGGCCCg -3'
miRNA:   3'- -CGcGugCGUUGcaCGCGuCCGCCGGG- -5'
26469 3' -60.5 NC_005357.1 + 18330 0.68 0.266163
Target:  5'- cGCGCAUGUAGCGggGUGCccGUGcCCCg -3'
miRNA:   3'- -CGCGUGCGUUGCa-CGCGucCGCcGGG- -5'
26469 3' -60.5 NC_005357.1 + 38304 0.68 0.266163
Target:  5'- uGCGCcgggaaGCAACGcugcaGCGCAGGCuGGCg- -3'
miRNA:   3'- -CGCGug----CGUUGCa----CGCGUCCG-CCGgg -5'
26469 3' -60.5 NC_005357.1 + 8183 0.69 0.259559
Target:  5'- gGCGCugGCGuccugcccguuCGUcaGCGaCAuGGCGGCCa -3'
miRNA:   3'- -CGCGugCGUu----------GCA--CGC-GU-CCGCCGGg -5'
26469 3' -60.5 NC_005357.1 + 15302 0.69 0.259559
Target:  5'- aUGCGCGCGGCGUcaGCuuuGCAGGCuaaGGCaCUg -3'
miRNA:   3'- cGCGUGCGUUGCA--CG---CGUCCG---CCG-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.