miRNA display CGI


Results 41 - 60 of 145 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26469 3' -60.5 NC_005357.1 + 9324 0.75 0.088619
Target:  5'- gGCGCACGuCGGCGcG-GCGGGCGGCg- -3'
miRNA:   3'- -CGCGUGC-GUUGCaCgCGUCCGCCGgg -5'
26469 3' -60.5 NC_005357.1 + 27479 0.76 0.076992
Target:  5'- cGCGCACGCAccacGCGagGaUGCcGGCGGCCUc -3'
miRNA:   3'- -CGCGUGCGU----UGCa-C-GCGuCCGCCGGG- -5'
26469 3' -60.5 NC_005357.1 + 37049 0.77 0.069541
Target:  5'- cGCGCAC-CAgugacauaacccuggGCGcgGUGCAGGCGGCCa -3'
miRNA:   3'- -CGCGUGcGU---------------UGCa-CGCGUCCGCCGGg -5'
26469 3' -60.5 NC_005357.1 + 507 0.77 0.061374
Target:  5'- uGCGC-CGCGGCG-GCuuGCAGGCGGUUCu -3'
miRNA:   3'- -CGCGuGCGUUGCaCG--CGUCCGCCGGG- -5'
26469 3' -60.5 NC_005357.1 + 31042 0.78 0.057975
Target:  5'- cGCGCGgGcCAACGUGCGCGaa-GGCCCg -3'
miRNA:   3'- -CGCGUgC-GUUGCACGCGUccgCCGGG- -5'
26469 3' -60.5 NC_005357.1 + 39592 0.72 0.149691
Target:  5'- gGUGCugGCGcCGcUGCGCGuGGCcgcgagcaccuGGCCCg -3'
miRNA:   3'- -CGCGugCGUuGC-ACGCGU-CCG-----------CCGGG- -5'
26469 3' -60.5 NC_005357.1 + 11503 0.72 0.157994
Target:  5'- cCGCAaaggGCAGCGccUGCGCuGGCgugaGGCCCu -3'
miRNA:   3'- cGCGUg---CGUUGC--ACGCGuCCG----CCGGG- -5'
26469 3' -60.5 NC_005357.1 + 25486 0.69 0.246752
Target:  5'- aGgGCGCGCu-CGUGCuugguCAGGgucaGGCCCg -3'
miRNA:   3'- -CgCGUGCGuuGCACGc----GUCCg---CCGGG- -5'
26469 3' -60.5 NC_005357.1 + 39490 0.69 0.240548
Target:  5'- cGUGcCGCGCGACGcgGUGUGGGcCGGCa- -3'
miRNA:   3'- -CGC-GUGCGUUGCa-CGCGUCC-GCCGgg -5'
26469 3' -60.5 NC_005357.1 + 35977 0.69 0.240548
Target:  5'- uGCGCGacgGCGACGccuuCGCGGGCGGUg- -3'
miRNA:   3'- -CGCGUg--CGUUGCac--GCGUCCGCCGgg -5'
26469 3' -60.5 NC_005357.1 + 8392 0.69 0.22853
Target:  5'- cGCGCugGCuGCGUaGC-CAGuCGGCCa -3'
miRNA:   3'- -CGCGugCGuUGCA-CGcGUCcGCCGGg -5'
26469 3' -60.5 NC_005357.1 + 25760 0.7 0.222713
Target:  5'- gGCGCGCugcugggcggcgGCAACGauggccgcgaUGCGCGcGGCGcGCUCg -3'
miRNA:   3'- -CGCGUG------------CGUUGC----------ACGCGU-CCGC-CGGG- -5'
26469 3' -60.5 NC_005357.1 + 6372 0.7 0.222713
Target:  5'- gGCcCACGuCGGCaaucagGCGCAGGCcggccGGCCCg -3'
miRNA:   3'- -CGcGUGC-GUUGca----CGCGUCCG-----CCGGG- -5'
26469 3' -60.5 NC_005357.1 + 16061 0.7 0.217023
Target:  5'- cGCGCACGUGGCcgcCGCGcGCGGCgCCg -3'
miRNA:   3'- -CGCGUGCGUUGcacGCGUcCGCCG-GG- -5'
26469 3' -60.5 NC_005357.1 + 38221 0.7 0.216461
Target:  5'- cCGCAagcCGCGACGUGCucgcggccaacauGCccgccaucgAGGCGGCCg -3'
miRNA:   3'- cGCGU---GCGUUGCACG-------------CG---------UCCGCCGGg -5'
26469 3' -60.5 NC_005357.1 + 4517 0.7 0.195495
Target:  5'- gGCGCccgugaACGUGGCGUGC-UGGGCGGUCg -3'
miRNA:   3'- -CGCG------UGCGUUGCACGcGUCCGCCGGg -5'
26469 3' -60.5 NC_005357.1 + 30422 0.71 0.185447
Target:  5'- -gGCAUgGCGAUGaGCGCGGGCagGGCCUc -3'
miRNA:   3'- cgCGUG-CGUUGCaCGCGUCCG--CCGGG- -5'
26469 3' -60.5 NC_005357.1 + 27574 0.71 0.166711
Target:  5'- cGCGUAaaggGCAcCG-GCaGCAGGCGGCgCCa -3'
miRNA:   3'- -CGCGUg---CGUuGCaCG-CGUCCGCCG-GG- -5'
26469 3' -60.5 NC_005357.1 + 41613 0.71 0.165376
Target:  5'- uGCGCGCGCucaagcccAgccaccugcugacgGCGauUGCGCA-GCGGCCCg -3'
miRNA:   3'- -CGCGUGCG--------U--------------UGC--ACGCGUcCGCCGGG- -5'
26469 3' -60.5 NC_005357.1 + 27418 0.72 0.157994
Target:  5'- uCGCGCGCcuGGCGcaccGCGCccGGCGGCCg -3'
miRNA:   3'- cGCGUGCG--UUGCa---CGCGu-CCGCCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.