Results 1 - 14 of 14 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
26469 | 5' | -50 | NC_005357.1 | + | 32919 | 0.66 | 0.906414 |
Target: 5'- aUGAugccACUGUUCGCACGgcgGAACa-- -3' miRNA: 3'- gGCU----UGACGAGCGUGCaaaCUUGguu -5' |
|||||||
26469 | 5' | -50 | NC_005357.1 | + | 34022 | 0.66 | 0.891718 |
Target: 5'- gCGAACUGCUCGCugccCGacacgUGGGCg-- -3' miRNA: 3'- gGCUUGACGAGCGu---GCaa---ACUUGguu -5' |
|||||||
26469 | 5' | -50 | NC_005357.1 | + | 27071 | 0.66 | 0.891718 |
Target: 5'- aCCGAGgUGaagcagCGCACGUccGAACCc- -3' miRNA: 3'- -GGCUUgACga----GCGUGCAaaCUUGGuu -5' |
|||||||
26469 | 5' | -50 | NC_005357.1 | + | 22870 | 0.67 | 0.87501 |
Target: 5'- uUGGGCUGCuucugguUCGCGCGgUUGAACg-- -3' miRNA: 3'- gGCUUGACG-------AGCGUGCaAACUUGguu -5' |
|||||||
26469 | 5' | -50 | NC_005357.1 | + | 21123 | 0.67 | 0.857936 |
Target: 5'- cCCGAAgUGCUCGaCAaGUUcgacgccgaccgcUGGGCCGAc -3' miRNA: 3'- -GGCUUgACGAGC-GUgCAA-------------ACUUGGUU- -5' |
|||||||
26469 | 5' | -50 | NC_005357.1 | + | 19243 | 0.67 | 0.849901 |
Target: 5'- gCCGAccuGCUGCugUCGCACcagcaggGGGCCGAa -3' miRNA: 3'- -GGCU---UGACG--AGCGUGcaaa---CUUGGUU- -5' |
|||||||
26469 | 5' | -50 | NC_005357.1 | + | 37438 | 0.68 | 0.83131 |
Target: 5'- gCCGAccuGCUGUUCGCcaACGUcaugGAACUGAc -3' miRNA: 3'- -GGCU---UGACGAGCG--UGCAaa--CUUGGUU- -5' |
|||||||
26469 | 5' | -50 | NC_005357.1 | + | 40081 | 0.68 | 0.83131 |
Target: 5'- gCCGAAUUGCggCGCACGc--GcGCCAc -3' miRNA: 3'- -GGCUUGACGa-GCGUGCaaaCuUGGUu -5' |
|||||||
26469 | 5' | -50 | NC_005357.1 | + | 9754 | 0.68 | 0.811774 |
Target: 5'- gCGAACUGCUCGggcuuCACGUcgGGcagcuucgcggcGCCGAa -3' miRNA: 3'- gGCUUGACGAGC-----GUGCAaaCU------------UGGUU- -5' |
|||||||
26469 | 5' | -50 | NC_005357.1 | + | 11067 | 0.69 | 0.748477 |
Target: 5'- aCGAACUGCUCGaACGUguccGggUCGc -3' miRNA: 3'- gGCUUGACGAGCgUGCAaa--CuuGGUu -5' |
|||||||
26469 | 5' | -50 | NC_005357.1 | + | 7004 | 0.69 | 0.747373 |
Target: 5'- gCGAGCgggucgGCUCGCgugauggGCGUUUGuGCCGc -3' miRNA: 3'- gGCUUGa-----CGAGCG-------UGCAAACuUGGUu -5' |
|||||||
26469 | 5' | -50 | NC_005357.1 | + | 2746 | 0.73 | 0.541151 |
Target: 5'- cCCGGcGCUGCUCGgGCGUgccGACCAc -3' miRNA: 3'- -GGCU-UGACGAGCgUGCAaacUUGGUu -5' |
|||||||
26469 | 5' | -50 | NC_005357.1 | + | 35435 | 0.75 | 0.412607 |
Target: 5'- gCCGAcCcGCUCGCGCGUgUGAaaGCCAu -3' miRNA: 3'- -GGCUuGaCGAGCGUGCAaACU--UGGUu -5' |
|||||||
26469 | 5' | -50 | NC_005357.1 | + | 31303 | 1.09 | 0.002635 |
Target: 5'- gCCGAACUGCUCGCACGUUUGAACCAAu -3' miRNA: 3'- -GGCUUGACGAGCGUGCAAACUUGGUU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home