miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2647 3' -51.9 NC_001491.2 + 33361 0.66 0.990424
Target:  5'- --gGGGAGGccGGACucacucgCCGCcGUGGCCGGc -3'
miRNA:   3'- ggaCCCUUU--UCUG-------GGCGuUACUGGCU- -5'
2647 3' -51.9 NC_001491.2 + 146537 0.66 0.990168
Target:  5'- gCUGGGAGAguugcacucuucgcGGGCCCuuGCcAUG-CCGGa -3'
miRNA:   3'- gGACCCUUU--------------UCUGGG--CGuUACuGGCU- -5'
2647 3' -51.9 NC_001491.2 + 61907 0.66 0.989232
Target:  5'- uCCUGGG---GGACCaUGC--UGACCGu -3'
miRNA:   3'- -GGACCCuuuUCUGG-GCGuuACUGGCu -5'
2647 3' -51.9 NC_001491.2 + 116 0.66 0.989232
Target:  5'- --gGGGAGGAGuCCgGUAGUGACg-- -3'
miRNA:   3'- ggaCCCUUUUCuGGgCGUUACUGgcu -5'
2647 3' -51.9 NC_001491.2 + 68972 0.66 0.987776
Target:  5'- cCCUGGGGcccAAGGcgauuCCCGguGuUGACCa- -3'
miRNA:   3'- -GGACCCU---UUUCu----GGGCguU-ACUGGcu -5'
2647 3' -51.9 NC_001491.2 + 43775 0.66 0.987776
Target:  5'- uUUGGGcGAGGACgCGCugcGACCGc -3'
miRNA:   3'- gGACCCuUUUCUGgGCGuuaCUGGCu -5'
2647 3' -51.9 NC_001491.2 + 93286 0.66 0.987776
Target:  5'- aUCUGGGGGcAAaACCCGCA--GGCCa- -3'
miRNA:   3'- -GGACCCUU-UUcUGGGCGUuaCUGGcu -5'
2647 3' -51.9 NC_001491.2 + 61429 0.66 0.986172
Target:  5'- uCCUGGGGuAGGGACguuacacgacugCUGCGA-GACCGc -3'
miRNA:   3'- -GGACCCU-UUUCUG------------GGCGUUaCUGGCu -5'
2647 3' -51.9 NC_001491.2 + 46390 0.66 0.984411
Target:  5'- cUCUGGGAGuAGuuacucacccuGCUCGCGuUGGCCGc -3'
miRNA:   3'- -GGACCCUUuUC-----------UGGGCGUuACUGGCu -5'
2647 3' -51.9 NC_001491.2 + 31203 0.66 0.984411
Target:  5'- cCCgagGGGGuggcuccGAGGCCCGCuucGACCu- -3'
miRNA:   3'- -GGa--CCCUu------UUCUGGGCGuuaCUGGcu -5'
2647 3' -51.9 NC_001491.2 + 64719 0.66 0.984411
Target:  5'- aUCUGGGGGcuccAGGCCCaacaGCAA-GGCCGu -3'
miRNA:   3'- -GGACCCUUu---UCUGGG----CGUUaCUGGCu -5'
2647 3' -51.9 NC_001491.2 + 84405 0.66 0.984411
Target:  5'- aCUGGGAcgcaACCacaCGCGAUGACCu- -3'
miRNA:   3'- gGACCCUuuucUGG---GCGUUACUGGcu -5'
2647 3' -51.9 NC_001491.2 + 34999 0.67 0.982685
Target:  5'- cCCUGGGGAaccgcauccucaccAagcggucccacgccuGGGCCgGCAAcugGACCGGg -3'
miRNA:   3'- -GGACCCUU--------------U---------------UCUGGgCGUUa--CUGGCU- -5'
2647 3' -51.9 NC_001491.2 + 48844 0.67 0.980385
Target:  5'- cCCUGGGu--GGGCCUcCAA-GGCCGu -3'
miRNA:   3'- -GGACCCuuuUCUGGGcGUUaCUGGCu -5'
2647 3' -51.9 NC_001491.2 + 105701 0.67 0.97296
Target:  5'- -gUGGGAGGAGGgCCGCuggcGGCCu- -3'
miRNA:   3'- ggACCCUUUUCUgGGCGuua-CUGGcu -5'
2647 3' -51.9 NC_001491.2 + 105764 0.67 0.97296
Target:  5'- -gUGGGAGGAGGgCCGCuggcGGCCu- -3'
miRNA:   3'- ggACCCUUUUCUgGGCGuua-CUGGcu -5'
2647 3' -51.9 NC_001491.2 + 105826 0.67 0.97296
Target:  5'- -gUGGGAGGAGGgCCGCuggcGGCCu- -3'
miRNA:   3'- ggACCCUUUUCUgGGCGuua-CUGGcu -5'
2647 3' -51.9 NC_001491.2 + 131251 0.68 0.960158
Target:  5'- uCCgGaGGgcGAGACUCGCGAgGGCCGu -3'
miRNA:   3'- -GGaC-CCuuUUCUGGGCGUUaCUGGCu -5'
2647 3' -51.9 NC_001491.2 + 39019 0.68 0.960158
Target:  5'- --gGGGAGAAGGCCgGCugccccagGACCa- -3'
miRNA:   3'- ggaCCCUUUUCUGGgCGuua-----CUGGcu -5'
2647 3' -51.9 NC_001491.2 + 24490 0.68 0.956396
Target:  5'- --gGuGGAGAAGACaCCGUAGUGGgUGAg -3'
miRNA:   3'- ggaC-CCUUUUCUG-GGCGUUACUgGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.