Results 21 - 30 of 30 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
|
R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 2647 | 5' | -56.9 | NC_001491.2 | + | 48381 | 0.66 | 0.889336 |
|
Target: 5'- aGCGGcUCaaGCGCGCCcccggcgcgaccgUCCACCc -3' miRNA: 3'- aCGCCcAGg-CGCGCGGuaaa---------AGGUGG- -5' |
|||||||
| 2647 | 5' | -56.9 | NC_001491.2 | + | 51174 | 0.67 | 0.823021 |
|
Target: 5'- cUGCGGGUUguugCGCucggcaaaaGCGCCGg---CUACCa -3' miRNA: 3'- -ACGCCCAG----GCG---------CGCGGUaaaaGGUGG- -5' |
|||||||
| 2647 | 5' | -56.9 | NC_001491.2 | + | 55014 | 0.7 | 0.647462 |
|
Target: 5'- cUGCGcucgCCGCGCGCCGaagccaagaaaUCCACCa -3' miRNA: 3'- -ACGCcca-GGCGCGCGGUaaa--------AGGUGG- -5' |
|||||||
| 2647 | 5' | -56.9 | NC_001491.2 | + | 84477 | 0.68 | 0.778798 |
|
Target: 5'- aGCGcagagCCGgGCGCCcg--UCCACCa -3' miRNA: 3'- aCGCcca--GGCgCGCGGuaaaAGGUGG- -5' |
|||||||
| 2647 | 5' | -56.9 | NC_001491.2 | + | 91256 | 0.67 | 0.814485 |
|
Target: 5'- gGCGGuuGUuuGCGCcuCCAUguUUUUCACCa -3' miRNA: 3'- aCGCC--CAggCGCGc-GGUA--AAAGGUGG- -5' |
|||||||
| 2647 | 5' | -56.9 | NC_001491.2 | + | 109017 | 0.66 | 0.891341 |
|
Target: 5'- aGCaGccUCGCGCGCCGUUgacaagUCCuGCCg -3' miRNA: 3'- aCGcCcaGGCGCGCGGUAAa-----AGG-UGG- -5' |
|||||||
| 2647 | 5' | -56.9 | NC_001491.2 | + | 112009 | 1.12 | 0.001446 |
|
Target: 5'- gUGCGGGUCCGCGCGCCAUUUUCCACCa -3' miRNA: 3'- -ACGCCCAGGCGCGCGGUAAAAGGUGG- -5' |
|||||||
| 2647 | 5' | -56.9 | NC_001491.2 | + | 119480 | 0.68 | 0.805787 |
|
Target: 5'- cUGCGGGUCCcugGCaaGCUGUUaUCUGCUg -3' miRNA: 3'- -ACGCCCAGG---CGcgCGGUAAaAGGUGG- -5' |
|||||||
| 2647 | 5' | -56.9 | NC_001491.2 | + | 140707 | 0.69 | 0.750649 |
|
Target: 5'- --aGGG-CCGUGCGCCuggcgCUACCu -3' miRNA: 3'- acgCCCaGGCGCGCGGuaaaaGGUGG- -5' |
|||||||
| 2647 | 5' | -56.9 | NC_001491.2 | + | 147717 | 0.66 | 0.877598 |
|
Target: 5'- gGCaGGGUCCGgccCGCGUCAg---CC-CCu -3' miRNA: 3'- aCG-CCCAGGC---GCGCGGUaaaaGGuGG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home