Results 21 - 30 of 30 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 2647 | 5' | -56.9 | NC_001491.2 | + | 2654 | 0.69 | 0.750649 |
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Target: 5'- cGCGGGgaa-CGCGCCugaaUCCGCCc -3' miRNA: 3'- aCGCCCaggcGCGCGGuaaaAGGUGG- -5' |
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| 2647 | 5' | -56.9 | NC_001491.2 | + | 140707 | 0.69 | 0.750649 |
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Target: 5'- --aGGG-CCGUGCGCCuggcgCUACCu -3' miRNA: 3'- acgCCCaGGCGCGCGGuaaaaGGUGG- -5' |
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| 2647 | 5' | -56.9 | NC_001491.2 | + | 10522 | 0.69 | 0.750649 |
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Target: 5'- cGCGGcGUacCUGCGCGCCcgcggCCGCa -3' miRNA: 3'- aCGCC-CA--GGCGCGCGGuaaaaGGUGg -5' |
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| 2647 | 5' | -56.9 | NC_001491.2 | + | 43832 | 0.69 | 0.741049 |
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Target: 5'- aGcCGGG-CCGC-CGCCAagcuugCCGCCg -3' miRNA: 3'- aC-GCCCaGGCGcGCGGUaaaa--GGUGG- -5' |
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| 2647 | 5' | -56.9 | NC_001491.2 | + | 12554 | 0.7 | 0.691828 |
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Target: 5'- cGCGGGa--GCGCGCgAgcg-CCGCCu -3' miRNA: 3'- aCGCCCaggCGCGCGgUaaaaGGUGG- -5' |
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| 2647 | 5' | -56.9 | NC_001491.2 | + | 55014 | 0.7 | 0.647462 |
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Target: 5'- cUGCGcucgCCGCGCGCCGaagccaagaaaUCCACCa -3' miRNA: 3'- -ACGCcca-GGCGCGCGGUaaa--------AGGUGG- -5' |
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| 2647 | 5' | -56.9 | NC_001491.2 | + | 35269 | 0.71 | 0.61197 |
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Target: 5'- cGCGGGUcgccugcgCCGUGCGCUGgccccgggagcgCCACCu -3' miRNA: 3'- aCGCCCA--------GGCGCGCGGUaaaa--------GGUGG- -5' |
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| 2647 | 5' | -56.9 | NC_001491.2 | + | 32795 | 0.71 | 0.590742 |
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Target: 5'- gGCGGcUUCGUGCGCCccgggcgUCUACCa -3' miRNA: 3'- aCGCCcAGGCGCGCGGuaaa---AGGUGG- -5' |
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| 2647 | 5' | -56.9 | NC_001491.2 | + | 1779 | 0.78 | 0.262711 |
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Target: 5'- cGCGGGUgCGCuCGCCGgcgcgagugUCCACCg -3' miRNA: 3'- aCGCCCAgGCGcGCGGUaaa------AGGUGG- -5' |
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| 2647 | 5' | -56.9 | NC_001491.2 | + | 112009 | 1.12 | 0.001446 |
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Target: 5'- gUGCGGGUCCGCGCGCCAUUUUCCACCa -3' miRNA: 3'- -ACGCCCAGGCGCGCGGUAAAAGGUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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