miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26470 5' -56.3 NC_005357.1 + 22049 0.66 0.579032
Target:  5'- gUUGCGGUcGUCGCgcuugcucGGGUcGCgGUCGGc -3'
miRNA:   3'- aAACGCCA-CAGCG--------UCCGcUGgUAGCU- -5'
26470 5' -56.3 NC_005357.1 + 26846 0.66 0.564598
Target:  5'- --cGCGGUGcaucCGCAGcGCGucgucacugacggcGCCAUUGAc -3'
miRNA:   3'- aaaCGCCACa---GCGUC-CGC--------------UGGUAGCU- -5'
26470 5' -56.3 NC_005357.1 + 20616 0.66 0.556865
Target:  5'- --gGCGGcGUCGCAGGUcGgUGUCGGc -3'
miRNA:   3'- aaaCGCCaCAGCGUCCGcUgGUAGCU- -5'
26470 5' -56.3 NC_005357.1 + 23756 0.66 0.532773
Target:  5'- --cGUGGUGUaacaggccggggGCGGGCGACCGccccCGAu -3'
miRNA:   3'- aaaCGCCACAg-----------CGUCCGCUGGUa---GCU- -5'
26470 5' -56.3 NC_005357.1 + 25061 0.66 0.524103
Target:  5'- -aUGCaGGcauaccUGUCGCAGGCGAUgGUgucCGAu -3'
miRNA:   3'- aaACG-CC------ACAGCGUCCGCUGgUA---GCU- -5'
26470 5' -56.3 NC_005357.1 + 30694 0.67 0.513343
Target:  5'- aUUGuCGGUGUUGU-GGCGGgcauggcuuucuCCAUCGGa -3'
miRNA:   3'- aAAC-GCCACAGCGuCCGCU------------GGUAGCU- -5'
26470 5' -56.3 NC_005357.1 + 37074 0.67 0.502675
Target:  5'- --cGCGGU---GCAGGCGGCCAcgcagcgCGAu -3'
miRNA:   3'- aaaCGCCAcagCGUCCGCUGGUa------GCU- -5'
26470 5' -56.3 NC_005357.1 + 36132 0.67 0.492104
Target:  5'- -cUGCcGUcaauGUCGUGGGCGACCuguUCGGc -3'
miRNA:   3'- aaACGcCA----CAGCGUCCGCUGGu--AGCU- -5'
26470 5' -56.3 NC_005357.1 + 30985 0.67 0.491053
Target:  5'- -cUGcCGGUGUCGCGccuuaucGGCGACCugcacgcCGGc -3'
miRNA:   3'- aaAC-GCCACAGCGU-------CCGCUGGua-----GCU- -5'
26470 5' -56.3 NC_005357.1 + 24432 0.68 0.44091
Target:  5'- aUUUGuCGGUGcCGCGcGCGGCC-UCGGc -3'
miRNA:   3'- -AAAC-GCCACaGCGUcCGCUGGuAGCU- -5'
26470 5' -56.3 NC_005357.1 + 180 0.68 0.44091
Target:  5'- ---cCGGUGUCGCuGGGC-ACCGUCa- -3'
miRNA:   3'- aaacGCCACAGCG-UCCGcUGGUAGcu -5'
26470 5' -56.3 NC_005357.1 + 28007 0.69 0.40221
Target:  5'- ---aCGGUGcCGCAGGCGcGCCuggCGAc -3'
miRNA:   3'- aaacGCCACaGCGUCCGC-UGGua-GCU- -5'
26470 5' -56.3 NC_005357.1 + 41828 0.69 0.392877
Target:  5'- -cUGCuGGccgaccCGCAGGCGGCCAUCa- -3'
miRNA:   3'- aaACG-CCaca---GCGUCCGCUGGUAGcu -5'
26470 5' -56.3 NC_005357.1 + 33964 0.69 0.383685
Target:  5'- -cUGCGGcaUCGCAGGCcACC-UCGAc -3'
miRNA:   3'- aaACGCCacAGCGUCCGcUGGuAGCU- -5'
26470 5' -56.3 NC_005357.1 + 20301 0.69 0.365736
Target:  5'- --aGCGG-GUUGCucGGCGGCCGguugCGAu -3'
miRNA:   3'- aaaCGCCaCAGCGu-CCGCUGGUa---GCU- -5'
26470 5' -56.3 NC_005357.1 + 5138 0.74 0.196348
Target:  5'- -cUGCaacGUGccgCGCAGGCGGCCGUCGc -3'
miRNA:   3'- aaACGc--CACa--GCGUCCGCUGGUAGCu -5'
26470 5' -56.3 NC_005357.1 + 30942 1.06 0.000764
Target:  5'- cUUUGCGGUGUCGCAGGCGACCAUCGAa -3'
miRNA:   3'- -AAACGCCACAGCGUCCGCUGGUAGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.