Results 1 - 17 of 17 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
26470 | 5' | -56.3 | NC_005357.1 | + | 22049 | 0.66 | 0.579032 |
Target: 5'- gUUGCGGUcGUCGCgcuugcucGGGUcGCgGUCGGc -3' miRNA: 3'- aAACGCCA-CAGCG--------UCCGcUGgUAGCU- -5' |
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26470 | 5' | -56.3 | NC_005357.1 | + | 26846 | 0.66 | 0.564598 |
Target: 5'- --cGCGGUGcaucCGCAGcGCGucgucacugacggcGCCAUUGAc -3' miRNA: 3'- aaaCGCCACa---GCGUC-CGC--------------UGGUAGCU- -5' |
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26470 | 5' | -56.3 | NC_005357.1 | + | 20616 | 0.66 | 0.556865 |
Target: 5'- --gGCGGcGUCGCAGGUcGgUGUCGGc -3' miRNA: 3'- aaaCGCCaCAGCGUCCGcUgGUAGCU- -5' |
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26470 | 5' | -56.3 | NC_005357.1 | + | 23756 | 0.66 | 0.532773 |
Target: 5'- --cGUGGUGUaacaggccggggGCGGGCGACCGccccCGAu -3' miRNA: 3'- aaaCGCCACAg-----------CGUCCGCUGGUa---GCU- -5' |
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26470 | 5' | -56.3 | NC_005357.1 | + | 25061 | 0.66 | 0.524103 |
Target: 5'- -aUGCaGGcauaccUGUCGCAGGCGAUgGUgucCGAu -3' miRNA: 3'- aaACG-CC------ACAGCGUCCGCUGgUA---GCU- -5' |
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26470 | 5' | -56.3 | NC_005357.1 | + | 30694 | 0.67 | 0.513343 |
Target: 5'- aUUGuCGGUGUUGU-GGCGGgcauggcuuucuCCAUCGGa -3' miRNA: 3'- aAAC-GCCACAGCGuCCGCU------------GGUAGCU- -5' |
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26470 | 5' | -56.3 | NC_005357.1 | + | 37074 | 0.67 | 0.502675 |
Target: 5'- --cGCGGU---GCAGGCGGCCAcgcagcgCGAu -3' miRNA: 3'- aaaCGCCAcagCGUCCGCUGGUa------GCU- -5' |
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26470 | 5' | -56.3 | NC_005357.1 | + | 36132 | 0.67 | 0.492104 |
Target: 5'- -cUGCcGUcaauGUCGUGGGCGACCuguUCGGc -3' miRNA: 3'- aaACGcCA----CAGCGUCCGCUGGu--AGCU- -5' |
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26470 | 5' | -56.3 | NC_005357.1 | + | 30985 | 0.67 | 0.491053 |
Target: 5'- -cUGcCGGUGUCGCGccuuaucGGCGACCugcacgcCGGc -3' miRNA: 3'- aaAC-GCCACAGCGU-------CCGCUGGua-----GCU- -5' |
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26470 | 5' | -56.3 | NC_005357.1 | + | 180 | 0.68 | 0.44091 |
Target: 5'- ---cCGGUGUCGCuGGGC-ACCGUCa- -3' miRNA: 3'- aaacGCCACAGCG-UCCGcUGGUAGcu -5' |
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26470 | 5' | -56.3 | NC_005357.1 | + | 24432 | 0.68 | 0.44091 |
Target: 5'- aUUUGuCGGUGcCGCGcGCGGCC-UCGGc -3' miRNA: 3'- -AAAC-GCCACaGCGUcCGCUGGuAGCU- -5' |
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26470 | 5' | -56.3 | NC_005357.1 | + | 28007 | 0.69 | 0.40221 |
Target: 5'- ---aCGGUGcCGCAGGCGcGCCuggCGAc -3' miRNA: 3'- aaacGCCACaGCGUCCGC-UGGua-GCU- -5' |
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26470 | 5' | -56.3 | NC_005357.1 | + | 41828 | 0.69 | 0.392877 |
Target: 5'- -cUGCuGGccgaccCGCAGGCGGCCAUCa- -3' miRNA: 3'- aaACG-CCaca---GCGUCCGCUGGUAGcu -5' |
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26470 | 5' | -56.3 | NC_005357.1 | + | 33964 | 0.69 | 0.383685 |
Target: 5'- -cUGCGGcaUCGCAGGCcACC-UCGAc -3' miRNA: 3'- aaACGCCacAGCGUCCGcUGGuAGCU- -5' |
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26470 | 5' | -56.3 | NC_005357.1 | + | 20301 | 0.69 | 0.365736 |
Target: 5'- --aGCGG-GUUGCucGGCGGCCGguugCGAu -3' miRNA: 3'- aaaCGCCaCAGCGu-CCGCUGGUa---GCU- -5' |
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26470 | 5' | -56.3 | NC_005357.1 | + | 5138 | 0.74 | 0.196348 |
Target: 5'- -cUGCaacGUGccgCGCAGGCGGCCGUCGc -3' miRNA: 3'- aaACGc--CACa--GCGUCCGCUGGUAGCu -5' |
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26470 | 5' | -56.3 | NC_005357.1 | + | 30942 | 1.06 | 0.000764 |
Target: 5'- cUUUGCGGUGUCGCAGGCGACCAUCGAa -3' miRNA: 3'- -AAACGCCACAGCGUCCGCUGGUAGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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