Results 1 - 16 of 16 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
26471 | 3' | -60.2 | NC_005357.1 | + | 29504 | 0.66 | 0.407396 |
Target: 5'- ---aGCUGaCUAGCguuaUGGGCGCGGCc -3' miRNA: 3'- gccaUGACaGGUCGg---ACCCGUGCCGc -5' |
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26471 | 3' | -60.2 | NC_005357.1 | + | 14995 | 0.66 | 0.380545 |
Target: 5'- aGGgcCUG--CGGCCgccGGGCGCGGUGc -3' miRNA: 3'- gCCauGACagGUCGGa--CCCGUGCCGC- -5' |
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26471 | 3' | -60.2 | NC_005357.1 | + | 17720 | 0.66 | 0.377925 |
Target: 5'- gCGGcccgaccgACUGgcaccgauggaCAGCCUGGGCguggacguggcccGCGGCGg -3' miRNA: 3'- -GCCa-------UGACag---------GUCGGACCCG-------------UGCCGC- -5' |
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26471 | 3' | -60.2 | NC_005357.1 | + | 12283 | 0.67 | 0.330503 |
Target: 5'- gGGuUGCUGgcCCAGCgUGccGGCuACGGCGg -3' miRNA: 3'- gCC-AUGACa-GGUCGgAC--CCG-UGCCGC- -5' |
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26471 | 3' | -60.2 | NC_005357.1 | + | 17074 | 0.67 | 0.328132 |
Target: 5'- cCGGUggccggcuaugcgaACUGgCCGGCCUGGaCAauccCGGCGa -3' miRNA: 3'- -GCCA--------------UGACaGGUCGGACCcGU----GCCGC- -5' |
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26471 | 3' | -60.2 | NC_005357.1 | + | 37037 | 0.67 | 0.313409 |
Target: 5'- aGGUGCUcgcggcgcgcaCCAGugacauaacCCUGGGCGCGGUGc -3' miRNA: 3'- gCCAUGAca---------GGUC---------GGACCCGUGCCGC- -5' |
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26471 | 3' | -60.2 | NC_005357.1 | + | 21727 | 0.68 | 0.278464 |
Target: 5'- gCGGUACggaugCCA-CCguUGGGCGCGGCc -3' miRNA: 3'- -GCCAUGaca--GGUcGG--ACCCGUGCCGc -5' |
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26471 | 3' | -60.2 | NC_005357.1 | + | 41609 | 0.69 | 0.251772 |
Target: 5'- uGGccgAC-GUUCGGCaagggCUGGGCGCGGCGc -3' miRNA: 3'- gCCa--UGaCAGGUCG-----GACCCGUGCCGC- -5' |
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26471 | 3' | -60.2 | NC_005357.1 | + | 29678 | 0.7 | 0.227223 |
Target: 5'- aGGaGCgcgCCAagcGUCUGGGCGCGGCa -3' miRNA: 3'- gCCaUGacaGGU---CGGACCCGUGCCGc -5' |
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26471 | 3' | -60.2 | NC_005357.1 | + | 29660 | 0.7 | 0.215727 |
Target: 5'- aGGUAgccgUUGcCCAGCa-GGGCGCGGCc -3' miRNA: 3'- gCCAU----GACaGGUCGgaCCCGUGCCGc -5' |
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26471 | 3' | -60.2 | NC_005357.1 | + | 41123 | 0.71 | 0.170007 |
Target: 5'- uGGUgGCcGUCgc-CCUGGGCGCGGCGg -3' miRNA: 3'- gCCA-UGaCAGgucGGACCCGUGCCGC- -5' |
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26471 | 3' | -60.2 | NC_005357.1 | + | 12825 | 0.71 | 0.168191 |
Target: 5'- cCGGcGCUGgacaacuggcaaaCCGcgcGCCUGGGCGCGGCc -3' miRNA: 3'- -GCCaUGACa------------GGU---CGGACCCGUGCCGc -5' |
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26471 | 3' | -60.2 | NC_005357.1 | + | 7604 | 0.72 | 0.161534 |
Target: 5'- gGGU-CUGUCCGucuGCCguggugauggucaggGGGCGCGGCu -3' miRNA: 3'- gCCAuGACAGGU---CGGa--------------CCCGUGCCGc -5' |
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26471 | 3' | -60.2 | NC_005357.1 | + | 10044 | 0.72 | 0.144536 |
Target: 5'- uCGGUGCUGgcuUCCugcugggcGGCCgGGGCcucgGCGGCGa -3' miRNA: 3'- -GCCAUGAC---AGG--------UCGGaCCCG----UGCCGC- -5' |
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26471 | 3' | -60.2 | NC_005357.1 | + | 32928 | 0.76 | 0.074024 |
Target: 5'- aCGGcUGCUGUUCGGCCaGGGCgaccACGGCu -3' miRNA: 3'- -GCC-AUGACAGGUCGGaCCCG----UGCCGc -5' |
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26471 | 3' | -60.2 | NC_005357.1 | + | 30497 | 1.09 | 0.000244 |
Target: 5'- uCGGUACUGUCCAGCCUGGGCACGGCGg -3' miRNA: 3'- -GCCAUGACAGGUCGGACCCGUGCCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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