miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26471 5' -54.6 NC_005357.1 + 30535 1.08 0.000836
Target:  5'- gGUCAGCGCACCCGACCAGAAGAACACc -3'
miRNA:   3'- -CAGUCGCGUGGGCUGGUCUUCUUGUG- -5'
26471 5' -54.6 NC_005357.1 + 32866 0.83 0.056043
Target:  5'- gGUCGGCGCcgagauugucgcGCCCGACUGGAAGGACAa -3'
miRNA:   3'- -CAGUCGCG------------UGGGCUGGUCUUCUUGUg -5'
26471 5' -54.6 NC_005357.1 + 12418 0.74 0.236943
Target:  5'- --gGGCGCGgCCGugCAGuuGGAGCACg -3'
miRNA:   3'- cagUCGCGUgGGCugGUCu-UCUUGUG- -5'
26471 5' -54.6 NC_005357.1 + 25091 0.74 0.236943
Target:  5'- -gCAGCGCGCCCGGCgCcGuGGGAUACa -3'
miRNA:   3'- caGUCGCGUGGGCUG-GuCuUCUUGUG- -5'
26471 5' -54.6 NC_005357.1 + 30212 0.73 0.270655
Target:  5'- gGUguGCuGCGuCCCGACCAGggGcaggcAGCGCg -3'
miRNA:   3'- -CAguCG-CGU-GGGCUGGUCuuC-----UUGUG- -5'
26471 5' -54.6 NC_005357.1 + 38334 0.71 0.35814
Target:  5'- uUCAGCGCcgcccACCUGGCCGGccuGAugGCu -3'
miRNA:   3'- cAGUCGCG-----UGGGCUGGUCuu-CUugUG- -5'
26471 5' -54.6 NC_005357.1 + 6343 0.71 0.367011
Target:  5'- -cCAGCcaaaGCGCCCGGCCcGAAGGccgggGCGCu -3'
miRNA:   3'- caGUCG----CGUGGGCUGGuCUUCU-----UGUG- -5'
26471 5' -54.6 NC_005357.1 + 32548 0.71 0.3852
Target:  5'- -cCA-CGCGCCUGGCCgAGAAGcAGCGCg -3'
miRNA:   3'- caGUcGCGUGGGCUGG-UCUUC-UUGUG- -5'
26471 5' -54.6 NC_005357.1 + 40483 0.71 0.3852
Target:  5'- ---cGCGCGCUCGACCAGAAcc-CGCa -3'
miRNA:   3'- caguCGCGUGGGCUGGUCUUcuuGUG- -5'
26471 5' -54.6 NC_005357.1 + 36073 0.7 0.394515
Target:  5'- -cCAGCGC-CCCGGCCuucgGGccGGGCGCu -3'
miRNA:   3'- caGUCGCGuGGGCUGG----UCuuCUUGUG- -5'
26471 5' -54.6 NC_005357.1 + 28720 0.7 0.394515
Target:  5'- uGUCGGCGCACgCGA--GGAuGAGCGCc -3'
miRNA:   3'- -CAGUCGCGUGgGCUggUCUuCUUGUG- -5'
26471 5' -54.6 NC_005357.1 + 23426 0.7 0.394515
Target:  5'- gGUCAGUGCgACgCCGGCCGGGaugcGGAugguucGCGCg -3'
miRNA:   3'- -CAGUCGCG-UG-GGCUGGUCU----UCU------UGUG- -5'
26471 5' -54.6 NC_005357.1 + 27800 0.7 0.403975
Target:  5'- aUCuGCGCACCgGcGCCGGAAGcauggaagccGACGCa -3'
miRNA:   3'- cAGuCGCGUGGgC-UGGUCUUC----------UUGUG- -5'
26471 5' -54.6 NC_005357.1 + 14220 0.69 0.453346
Target:  5'- cGUCGGCGUGgCCGACCuGGAcaaGGCGCc -3'
miRNA:   3'- -CAGUCGCGUgGGCUGGuCUUc--UUGUG- -5'
26471 5' -54.6 NC_005357.1 + 39383 0.69 0.46361
Target:  5'- ---cGUGCugCUGACCAGGauGGAGCAg -3'
miRNA:   3'- caguCGCGugGGCUGGUCU--UCUUGUg -5'
26471 5' -54.6 NC_005357.1 + 32656 0.69 0.484495
Target:  5'- uUCGGCGCcgcgaagcuGCCCGACguGAAgcccGAGCAg -3'
miRNA:   3'- cAGUCGCG---------UGGGCUGguCUU----CUUGUg -5'
26471 5' -54.6 NC_005357.1 + 42119 0.68 0.505819
Target:  5'- -aCGGCaCGCCCuGGaCGGAAGAGCGCg -3'
miRNA:   3'- caGUCGcGUGGG-CUgGUCUUCUUGUG- -5'
26471 5' -54.6 NC_005357.1 + 28316 0.68 0.516632
Target:  5'- cUCGGCGCGCUCGGCguCGGAcucGAugGCc -3'
miRNA:   3'- cAGUCGCGUGGGCUG--GUCUu--CUugUG- -5'
26471 5' -54.6 NC_005357.1 + 8722 0.68 0.527536
Target:  5'- uGUC-GCGCACCUugaGCCGGGacaccAGGGCGCg -3'
miRNA:   3'- -CAGuCGCGUGGGc--UGGUCU-----UCUUGUG- -5'
26471 5' -54.6 NC_005357.1 + 34888 0.68 0.549591
Target:  5'- -cCGGcCGCgaGCCagCGugCGGAAGAACACu -3'
miRNA:   3'- caGUC-GCG--UGG--GCugGUCUUCUUGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.