Results 41 - 60 of 84 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26473 | 3' | -59.2 | NC_005357.1 | + | 20617 | 0.66 | 0.444984 |
Target: 5'- gCGGCGUCGcAGGUCGGuGuCGGCcuGCgCUCg -3' miRNA: 3'- gGCUGCGGC-UCCAGCU-C-GUCG--UG-GAG- -5' |
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26473 | 3' | -59.2 | NC_005357.1 | + | 20862 | 0.66 | 0.464491 |
Target: 5'- -aGugGCCGAGcGgcaCGAGgaaaAGCugCUCa -3' miRNA: 3'- ggCugCGGCUC-Ca--GCUCg---UCGugGAG- -5' |
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26473 | 3' | -59.2 | NC_005357.1 | + | 21667 | 0.69 | 0.307362 |
Target: 5'- gCGAUgaGUCGAGcG-CGGcGCAGCGCCUCu -3' miRNA: 3'- gGCUG--CGGCUC-CaGCU-CGUCGUGGAG- -5' |
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26473 | 3' | -59.2 | NC_005357.1 | + | 22296 | 0.77 | 0.0829 |
Target: 5'- aCGGCGUCGAaGUCGGGCAGCACg-- -3' miRNA: 3'- gGCUGCGGCUcCAGCUCGUCGUGgag -5' |
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26473 | 3' | -59.2 | NC_005357.1 | + | 22898 | 0.7 | 0.258241 |
Target: 5'- aCGACuGCUGcGaGUCGAGCAGUugCUg -3' miRNA: 3'- gGCUG-CGGCuC-CAGCUCGUCGugGAg -5' |
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26473 | 3' | -59.2 | NC_005357.1 | + | 23250 | 0.68 | 0.338497 |
Target: 5'- aUCGACGCCGGcGGcaCGGGCAGCGa--- -3' miRNA: 3'- -GGCUGCGGCU-CCa-GCUCGUCGUggag -5' |
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26473 | 3' | -59.2 | NC_005357.1 | + | 23707 | 0.72 | 0.189152 |
Target: 5'- gCCGguaGCGCCcAGGUCGcgGGcCAGUGCCUCg -3' miRNA: 3'- -GGC---UGCGGcUCCAGC--UC-GUCGUGGAG- -5' |
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26473 | 3' | -59.2 | NC_005357.1 | + | 24596 | 0.7 | 0.258241 |
Target: 5'- uCCGGCguguccuuGCCGGGGUaggucAGCGGCACgUCg -3' miRNA: 3'- -GGCUG--------CGGCUCCAgc---UCGUCGUGgAG- -5' |
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26473 | 3' | -59.2 | NC_005357.1 | + | 25099 | 0.66 | 0.464491 |
Target: 5'- cCCGGCGCCGuGGgauacAGCgGGUGCUUCu -3' miRNA: 3'- -GGCUGCGGCuCCagc--UCG-UCGUGGAG- -5' |
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26473 | 3' | -59.2 | NC_005357.1 | + | 25287 | 0.66 | 0.464491 |
Target: 5'- gUCGaAUGCCuuGAGGUCGuGCGGCcgGCCc- -3' miRNA: 3'- -GGC-UGCGG--CUCCAGCuCGUCG--UGGag -5' |
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26473 | 3' | -59.2 | NC_005357.1 | + | 25516 | 0.67 | 0.41383 |
Target: 5'- cCCG-CGauGAGGUCGguuuugccgccgccGGCAGCGCCc- -3' miRNA: 3'- -GGCuGCggCUCCAGC--------------UCGUCGUGGag -5' |
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26473 | 3' | -59.2 | NC_005357.1 | + | 25619 | 0.72 | 0.184195 |
Target: 5'- aCGGCGgCGcGGUCGccAGCAGCGCgUCc -3' miRNA: 3'- gGCUGCgGCuCCAGC--UCGUCGUGgAG- -5' |
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26473 | 3' | -59.2 | NC_005357.1 | + | 25719 | 0.68 | 0.32032 |
Target: 5'- cCCG-CGgCGGGGUCGucguccucaccggcGGCAGCACgCUg -3' miRNA: 3'- -GGCuGCgGCUCCAGC--------------UCGUCGUG-GAg -5' |
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26473 | 3' | -59.2 | NC_005357.1 | + | 27298 | 0.66 | 0.464491 |
Target: 5'- uCCGcCGCCagcauGGGGUCGGGCcugguaGGCAgCUa -3' miRNA: 3'- -GGCuGCGG-----CUCCAGCUCG------UCGUgGAg -5' |
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26473 | 3' | -59.2 | NC_005357.1 | + | 28127 | 0.67 | 0.380545 |
Target: 5'- gCGguACGCCu-GGUCGGGCGGCAgCa- -3' miRNA: 3'- gGC--UGCGGcuCCAGCUCGUCGUgGag -5' |
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26473 | 3' | -59.2 | NC_005357.1 | + | 28397 | 0.67 | 0.371861 |
Target: 5'- uUCGACGCCGg---CGGcGCGGCGCCa- -3' miRNA: 3'- -GGCUGCGGCuccaGCU-CGUCGUGGag -5' |
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26473 | 3' | -59.2 | NC_005357.1 | + | 28472 | 0.68 | 0.322649 |
Target: 5'- gCCGuCGCCGuaguGGUCGAGCAuC-CgCUCg -3' miRNA: 3'- -GGCuGCGGCu---CCAGCUCGUcGuG-GAG- -5' |
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26473 | 3' | -59.2 | NC_005357.1 | + | 29087 | 0.67 | 0.389363 |
Target: 5'- uCgGGCGCCGAGGUCaggcccguGCGGgACUUg -3' miRNA: 3'- -GgCUGCGGCUCCAGcu------CGUCgUGGAg -5' |
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26473 | 3' | -59.2 | NC_005357.1 | + | 29790 | 0.66 | 0.435404 |
Target: 5'- cCCGACGCCaaAGGaCG-GCAGCAgCg- -3' miRNA: 3'- -GGCUGCGGc-UCCaGCuCGUCGUgGag -5' |
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26473 | 3' | -59.2 | NC_005357.1 | + | 29896 | 1.12 | 0.000205 |
Target: 5'- aCCGACGCCGAGGUCGAGCAGCACCUCg -3' miRNA: 3'- -GGCUGCGGCUCCAGCUCGUCGUGGAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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