miRNA display CGI


Results 61 - 80 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26473 3' -59.2 NC_005357.1 + 30279 0.68 0.354903
Target:  5'- gCGAguCGCCGGaaaacGUCGGGUAGCGCCc- -3'
miRNA:   3'- gGCU--GCGGCUc----CAGCUCGUCGUGGag -5'
26473 3' -59.2 NC_005357.1 + 30425 0.67 0.389363
Target:  5'- aUGGCGauGAGcG-CGGGCAGgGCCUCg -3'
miRNA:   3'- gGCUGCggCUC-CaGCUCGUCgUGGAG- -5'
26473 3' -59.2 NC_005357.1 + 30494 0.66 0.444984
Target:  5'- gCUGAaaguCGUCGAGGUUGAGCAcgagguggcGCAgCUUCu -3'
miRNA:   3'- -GGCU----GCGGCUCCAGCUCGU---------CGU-GGAG- -5'
26473 3' -59.2 NC_005357.1 + 31060 0.66 0.435404
Target:  5'- aCCGAggUGCCG-GG-CGAGCAGguCGCCa- -3'
miRNA:   3'- -GGCU--GCGGCuCCaGCUCGUC--GUGGag -5'
26473 3' -59.2 NC_005357.1 + 31628 0.71 0.204732
Target:  5'- gCCG-CGCCGAGG-CGcAGCAGUACaugCa -3'
miRNA:   3'- -GGCuGCGGCUCCaGC-UCGUCGUGga-G- -5'
26473 3' -59.2 NC_005357.1 + 31674 0.66 0.464491
Target:  5'- gCGG-GCCGAaGUCGAGC-GCGCCc- -3'
miRNA:   3'- gGCUgCGGCUcCAGCUCGuCGUGGag -5'
26473 3' -59.2 NC_005357.1 + 31913 0.67 0.380545
Target:  5'- gCGugGCCGGcGGUC-AGCAGUuCgUCa -3'
miRNA:   3'- gGCugCGGCU-CCAGcUCGUCGuGgAG- -5'
26473 3' -59.2 NC_005357.1 + 32344 0.68 0.34663
Target:  5'- aCCGcCGCCcAGGUCGcuGCGGuCGCCg- -3'
miRNA:   3'- -GGCuGCGGcUCCAGCu-CGUC-GUGGag -5'
26473 3' -59.2 NC_005357.1 + 32589 0.66 0.444984
Target:  5'- aUCGACGCCGAaacCGAGguGCAgCg- -3'
miRNA:   3'- -GGCUGCGGCUccaGCUCguCGUgGag -5'
26473 3' -59.2 NC_005357.1 + 32627 0.69 0.292634
Target:  5'- gCGACGCCGcGGUCGcuguccugucgaAGUucGGCGCCg- -3'
miRNA:   3'- gGCUGCGGCuCCAGC------------UCG--UCGUGGag -5'
26473 3' -59.2 NC_005357.1 + 33749 0.73 0.170007
Target:  5'- aCCaACGCCGAGGUgCGcGCGGCACg-- -3'
miRNA:   3'- -GGcUGCGGCUCCA-GCuCGUCGUGgag -5'
26473 3' -59.2 NC_005357.1 + 33870 0.75 0.112824
Target:  5'- aCGACGCCcaggauGAGGUCGAGC-GCgGCCUg -3'
miRNA:   3'- gGCUGCGG------CUCCAGCUCGuCG-UGGAg -5'
26473 3' -59.2 NC_005357.1 + 34473 0.66 0.454681
Target:  5'- gCG-CGCCGAGGccaCGGGCAaGCugucggaaauCCUCg -3'
miRNA:   3'- gGCuGCGGCUCCa--GCUCGU-CGu---------GGAG- -5'
26473 3' -59.2 NC_005357.1 + 34512 0.66 0.435404
Target:  5'- -gGACGCCGAGcGcaaCGAGCAGCuggcgAUCUa -3'
miRNA:   3'- ggCUGCGGCUC-Ca--GCUCGUCG-----UGGAg -5'
26473 3' -59.2 NC_005357.1 + 34740 0.66 0.474411
Target:  5'- gCCGGcCGCCGAGGUCaAGCccgacgACCUg -3'
miRNA:   3'- -GGCU-GCGGCUCCAGcUCGucg---UGGAg -5'
26473 3' -59.2 NC_005357.1 + 34794 0.73 0.1655
Target:  5'- gCCGGCGU--GGGUCGAGCcGCGCCc- -3'
miRNA:   3'- -GGCUGCGgcUCCAGCUCGuCGUGGag -5'
26473 3' -59.2 NC_005357.1 + 34882 0.7 0.271586
Target:  5'- gUGGCGCCGcGGaUCGAGCA-CGCCg- -3'
miRNA:   3'- gGCUGCGGCuCC-AGCUCGUcGUGGag -5'
26473 3' -59.2 NC_005357.1 + 35077 0.81 0.039394
Target:  5'- aCGACGCCGAGGUCGAGgCcGCGCUc- -3'
miRNA:   3'- gGCUGCGGCUCCAGCUC-GuCGUGGag -5'
26473 3' -59.2 NC_005357.1 + 35155 0.69 0.314935
Target:  5'- aCGGCcCCGAGGcCaAGCAGCAgUUCa -3'
miRNA:   3'- gGCUGcGGCUCCaGcUCGUCGUgGAG- -5'
26473 3' -59.2 NC_005357.1 + 35193 0.69 0.314935
Target:  5'- gCCGAcauCGCCGAGGgUGAGCgcGGCGCa-- -3'
miRNA:   3'- -GGCU---GCGGCUCCaGCUCG--UCGUGgag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.