miRNA display CGI


Results 41 - 60 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26473 3' -59.2 NC_005357.1 + 30279 0.68 0.354903
Target:  5'- gCGAguCGCCGGaaaacGUCGGGUAGCGCCc- -3'
miRNA:   3'- gGCU--GCGGCUc----CAGCUCGUCGUGGag -5'
26473 3' -59.2 NC_005357.1 + 8786 0.68 0.354903
Target:  5'- gCGGCGCaCGAugGGUCG-GCcGCGCCg- -3'
miRNA:   3'- gGCUGCG-GCU--CCAGCuCGuCGUGGag -5'
26473 3' -59.2 NC_005357.1 + 14116 0.68 0.353237
Target:  5'- uCCGACGCCGAGcGcgcCGAGUucuucaaguucuGCGCCg- -3'
miRNA:   3'- -GGCUGCGGCUC-Ca--GCUCGu-----------CGUGGag -5'
26473 3' -59.2 NC_005357.1 + 32344 0.68 0.34663
Target:  5'- aCCGcCGCCcAGGUCGcuGCGGuCGCCg- -3'
miRNA:   3'- -GGCuGCGGcUCCAGCu-CGUC-GUGGag -5'
26473 3' -59.2 NC_005357.1 + 41143 0.68 0.34663
Target:  5'- gCGGCGgUGuGGgCGGGCAuCACCUCg -3'
miRNA:   3'- gGCUGCgGCuCCaGCUCGUcGUGGAG- -5'
26473 3' -59.2 NC_005357.1 + 14408 0.68 0.338497
Target:  5'- gCGACGCCGAcauGaUCGGcuucuucCAGCGCCUCa -3'
miRNA:   3'- gGCUGCGGCU---CcAGCUc------GUCGUGGAG- -5'
26473 3' -59.2 NC_005357.1 + 23250 0.68 0.338497
Target:  5'- aUCGACGCCGGcGGcaCGGGCAGCGa--- -3'
miRNA:   3'- -GGCUGCGGCU-CCa-GCUCGUCGUggag -5'
26473 3' -59.2 NC_005357.1 + 28472 0.68 0.322649
Target:  5'- gCCGuCGCCGuaguGGUCGAGCAuC-CgCUCg -3'
miRNA:   3'- -GGCuGCGGCu---CCAGCUCGUcGuG-GAG- -5'
26473 3' -59.2 NC_005357.1 + 25719 0.68 0.32032
Target:  5'- cCCG-CGgCGGGGUCGucguccucaccggcGGCAGCACgCUg -3'
miRNA:   3'- -GGCuGCgGCUCCAGC--------------UCGUCGUG-GAg -5'
26473 3' -59.2 NC_005357.1 + 35155 0.69 0.314935
Target:  5'- aCGGCcCCGAGGcCaAGCAGCAgUUCa -3'
miRNA:   3'- gGCUGcGGCUCCaGcUCGUCGUgGAG- -5'
26473 3' -59.2 NC_005357.1 + 7608 0.69 0.314935
Target:  5'- -gGACaGCaCGuGGUCGcGCAGCGCCg- -3'
miRNA:   3'- ggCUG-CG-GCuCCAGCuCGUCGUGGag -5'
26473 3' -59.2 NC_005357.1 + 35193 0.69 0.314935
Target:  5'- gCCGAcauCGCCGAGGgUGAGCgcGGCGCa-- -3'
miRNA:   3'- -GGCU---GCGGCUCCaGCUCG--UCGUGgag -5'
26473 3' -59.2 NC_005357.1 + 14931 0.69 0.307362
Target:  5'- gCUGGCgGCCGAGGcCGc-CGGCAuCCUCg -3'
miRNA:   3'- -GGCUG-CGGCUCCaGCucGUCGU-GGAG- -5'
26473 3' -59.2 NC_005357.1 + 21667 0.69 0.307362
Target:  5'- gCGAUgaGUCGAGcG-CGGcGCAGCGCCUCu -3'
miRNA:   3'- gGCUG--CGGCUC-CaGCU-CGUCGUGGAG- -5'
26473 3' -59.2 NC_005357.1 + 32627 0.69 0.292634
Target:  5'- gCGACGCCGcGGUCGcuguccugucgaAGUucGGCGCCg- -3'
miRNA:   3'- gGCUGCGGCuCCAGC------------UCG--UCGUGGag -5'
26473 3' -59.2 NC_005357.1 + 14351 0.69 0.288325
Target:  5'- aCGACGCCGcGGccaccugcccgcuguUCGAGCAG-ACCgUCg -3'
miRNA:   3'- gGCUGCGGCuCC---------------AGCUCGUCgUGG-AG- -5'
26473 3' -59.2 NC_005357.1 + 11338 0.69 0.28548
Target:  5'- gCCGGCcugcaCCGAGGUgaGcAGCGGCACCa- -3'
miRNA:   3'- -GGCUGc----GGCUCCAg-C-UCGUCGUGGag -5'
26473 3' -59.2 NC_005357.1 + 34882 0.7 0.271586
Target:  5'- gUGGCGCCGcGGaUCGAGCA-CGCCg- -3'
miRNA:   3'- gGCUGCGGCuCC-AGCUCGUcGUGGag -5'
26473 3' -59.2 NC_005357.1 + 24596 0.7 0.258241
Target:  5'- uCCGGCguguccuuGCCGGGGUaggucAGCGGCACgUCg -3'
miRNA:   3'- -GGCUG--------CGGCUCCAgc---UCGUCGUGgAG- -5'
26473 3' -59.2 NC_005357.1 + 22898 0.7 0.258241
Target:  5'- aCGACuGCUGcGaGUCGAGCAGUugCUg -3'
miRNA:   3'- gGCUG-CGGCuC-CAGCUCGUCGugGAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.