miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26473 5' -54.4 NC_005357.1 + 22611 0.66 0.669846
Target:  5'- aAGAAGCGCC-CcGcGCGCGGCagcaGGUa -3'
miRNA:   3'- cUUUUUGCGGuGaCaCGCGCCGa---CCA- -5'
26473 5' -54.4 NC_005357.1 + 29162 0.66 0.658456
Target:  5'- uGAAAGACGCCAaggaUG-GCaacUGGCUGGc -3'
miRNA:   3'- -CUUUUUGCGGUg---ACaCGc--GCCGACCa -5'
26473 5' -54.4 NC_005357.1 + 41132 0.66 0.64704
Target:  5'- -----uCGCC-CUGgGCGCGGC-GGUg -3'
miRNA:   3'- cuuuuuGCGGuGACaCGCGCCGaCCA- -5'
26473 5' -54.4 NC_005357.1 + 38309 0.66 0.64704
Target:  5'- cGGGAAGCaaCGCUGcaGCGCaGGCUGGc -3'
miRNA:   3'- -CUUUUUGcgGUGACa-CGCG-CCGACCa -5'
26473 5' -54.4 NC_005357.1 + 25783 0.67 0.601341
Target:  5'- --cGAugGCCGCgaUGcGCGCGGCgcgcucGGUa -3'
miRNA:   3'- cuuUUugCGGUG--ACaCGCGCCGa-----CCA- -5'
26473 5' -54.4 NC_005357.1 + 32920 0.67 0.601341
Target:  5'- ---uGAUGCCACUGUuCGCacggcggaacaGGCUGGc -3'
miRNA:   3'- cuuuUUGCGGUGACAcGCG-----------CCGACCa -5'
26473 5' -54.4 NC_005357.1 + 42250 0.67 0.578619
Target:  5'- gGGAuGACGCCGgcauuCUGcGCGCGGCagcuUGGg -3'
miRNA:   3'- -CUUuUUGCGGU-----GACaCGCGCCG----ACCa -5'
26473 5' -54.4 NC_005357.1 + 35044 0.67 0.567325
Target:  5'- uGGAAGGuCGCCGCgGUGCccGCcGCUGGa -3'
miRNA:   3'- -CUUUUU-GCGGUGaCACG--CGcCGACCa -5'
26473 5' -54.4 NC_005357.1 + 38862 0.68 0.544917
Target:  5'- ----cGCGUCGCUGaaauuuaugcgGCGCGGUUGGc -3'
miRNA:   3'- cuuuuUGCGGUGACa----------CGCGCCGACCa -5'
26473 5' -54.4 NC_005357.1 + 29409 0.68 0.522802
Target:  5'- cGAGGccguCGCCACUGcgcUGCGCGGcCUGu- -3'
miRNA:   3'- -CUUUuu--GCGGUGAC---ACGCGCC-GACca -5'
26473 5' -54.4 NC_005357.1 + 19998 0.68 0.511874
Target:  5'- cGAGucCGCCGCcGUcaagGCGUGGCUGGc -3'
miRNA:   3'- cUUUuuGCGGUGaCA----CGCGCCGACCa -5'
26473 5' -54.4 NC_005357.1 + 13766 0.69 0.476524
Target:  5'- ---cAGCGCCGacaugagcgcaaucUUGUGCGCGuuGCUGGUc -3'
miRNA:   3'- cuuuUUGCGGU--------------GACACGCGC--CGACCA- -5'
26473 5' -54.4 NC_005357.1 + 39597 0.69 0.458791
Target:  5'- ---uGGCGCCGCUGcGCGUGGCcgcgagcaccUGGc -3'
miRNA:   3'- cuuuUUGCGGUGACaCGCGCCG----------ACCa -5'
26473 5' -54.4 NC_005357.1 + 18367 0.81 0.085492
Target:  5'- -----cCGCUACUGUGCGCGGCaUGGa -3'
miRNA:   3'- cuuuuuGCGGUGACACGCGCCG-ACCa -5'
26473 5' -54.4 NC_005357.1 + 29936 1.03 0.001892
Target:  5'- uGAAAACGCCACUGUGCGCGGCUGGUu -3'
miRNA:   3'- cUUUUUGCGGUGACACGCGCCGACCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.