miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26474 3' -57.8 NC_005357.1 + 1750 0.66 0.555719
Target:  5'- aCCGGGCGGucauggccggccugcGccUGGCGCGUcgGgCCGa -3'
miRNA:   3'- gGGCCUGCU---------------Ca-ACCGCGCGuaCaGGC- -5'
26474 3' -57.8 NC_005357.1 + 36914 0.66 0.551462
Target:  5'- gCCUGGAacuaccaggcacCGAGUUGGCGC-UAUGgcaCCu -3'
miRNA:   3'- -GGGCCU------------GCUCAACCGCGcGUACa--GGc -5'
26474 3' -57.8 NC_005357.1 + 32416 0.66 0.509511
Target:  5'- aCCaGGGCGGGggccgGGCGCGCGgcacuUUCGa -3'
miRNA:   3'- gGG-CCUGCUCaa---CCGCGCGUac---AGGC- -5'
26474 3' -57.8 NC_005357.1 + 29327 0.66 0.507447
Target:  5'- aCCCGGaACGGcucaagauuGCGCGCGUGgaggCCGa -3'
miRNA:   3'- -GGGCC-UGCUcaac-----CGCGCGUACa---GGC- -5'
26474 3' -57.8 NC_005357.1 + 34414 0.67 0.499227
Target:  5'- aCCGG-CGaAGcUGGCGCcaaggGCAcGUCCGa -3'
miRNA:   3'- gGGCCuGC-UCaACCGCG-----CGUaCAGGC- -5'
26474 3' -57.8 NC_005357.1 + 2512 0.67 0.489037
Target:  5'- aCCCGuuCGGGcugGGCGUGCcgGUCa- -3'
miRNA:   3'- -GGGCcuGCUCaa-CCGCGCGuaCAGgc -5'
26474 3' -57.8 NC_005357.1 + 39194 0.67 0.475938
Target:  5'- gCUCGGGCaGGUcgaauuauucaucgUGGCGgGCAaGUCCa -3'
miRNA:   3'- -GGGCCUGcUCA--------------ACCGCgCGUaCAGGc -5'
26474 3' -57.8 NC_005357.1 + 8571 0.68 0.439656
Target:  5'- uCCUGGGCGucGUaGGcCGCGCGUGcggCCu -3'
miRNA:   3'- -GGGCCUGCu-CAaCC-GCGCGUACa--GGc -5'
26474 3' -57.8 NC_005357.1 + 10580 0.68 0.439656
Target:  5'- cCUCGGGCGuAGUacccaGGCGCGCAg--CCu -3'
miRNA:   3'- -GGGCCUGC-UCAa----CCGCGCGUacaGGc -5'
26474 3' -57.8 NC_005357.1 + 34556 0.68 0.430122
Target:  5'- cCCUGGACGAGUUcgaguuccugGGUgacuucaaGCGCGUGcgCCu -3'
miRNA:   3'- -GGGCCUGCUCAA----------CCG--------CGCGUACa-GGc -5'
26474 3' -57.8 NC_005357.1 + 31538 0.68 0.430122
Target:  5'- uUCCGGugGAGgaauacgccGCGCGCAUcgcgCCGa -3'
miRNA:   3'- -GGGCCugCUCaac------CGCGCGUAca--GGC- -5'
26474 3' -57.8 NC_005357.1 + 38043 0.68 0.420711
Target:  5'- gCCCGGcGCGAcGgcgccUGGCuGCGCAUccgccugccGUCCGg -3'
miRNA:   3'- -GGGCC-UGCU-Ca----ACCG-CGCGUA---------CAGGC- -5'
26474 3' -57.8 NC_005357.1 + 12275 0.72 0.24166
Target:  5'- uCCUGGGCGGGUugcUGGCccaGCGUG-CCGg -3'
miRNA:   3'- -GGGCCUGCUCA---ACCGcg-CGUACaGGC- -5'
26474 3' -57.8 NC_005357.1 + 40912 0.74 0.181136
Target:  5'- gCUGGGCGcgaauaAGggGGCGC-CAUGUCCGa -3'
miRNA:   3'- gGGCCUGC------UCaaCCGCGcGUACAGGC- -5'
26474 3' -57.8 NC_005357.1 + 29591 1.11 0.000379
Target:  5'- gCCCGGACGAGUUGGCGCGCAUGUCCGa -3'
miRNA:   3'- -GGGCCUGCUCAACCGCGCGUACAGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.