Results 1 - 15 of 15 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
26474 | 3' | -57.8 | NC_005357.1 | + | 1750 | 0.66 | 0.555719 |
Target: 5'- aCCGGGCGGucauggccggccugcGccUGGCGCGUcgGgCCGa -3' miRNA: 3'- gGGCCUGCU---------------Ca-ACCGCGCGuaCaGGC- -5' |
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26474 | 3' | -57.8 | NC_005357.1 | + | 36914 | 0.66 | 0.551462 |
Target: 5'- gCCUGGAacuaccaggcacCGAGUUGGCGC-UAUGgcaCCu -3' miRNA: 3'- -GGGCCU------------GCUCAACCGCGcGUACa--GGc -5' |
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26474 | 3' | -57.8 | NC_005357.1 | + | 32416 | 0.66 | 0.509511 |
Target: 5'- aCCaGGGCGGGggccgGGCGCGCGgcacuUUCGa -3' miRNA: 3'- gGG-CCUGCUCaa---CCGCGCGUac---AGGC- -5' |
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26474 | 3' | -57.8 | NC_005357.1 | + | 29327 | 0.66 | 0.507447 |
Target: 5'- aCCCGGaACGGcucaagauuGCGCGCGUGgaggCCGa -3' miRNA: 3'- -GGGCC-UGCUcaac-----CGCGCGUACa---GGC- -5' |
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26474 | 3' | -57.8 | NC_005357.1 | + | 34414 | 0.67 | 0.499227 |
Target: 5'- aCCGG-CGaAGcUGGCGCcaaggGCAcGUCCGa -3' miRNA: 3'- gGGCCuGC-UCaACCGCG-----CGUaCAGGC- -5' |
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26474 | 3' | -57.8 | NC_005357.1 | + | 2512 | 0.67 | 0.489037 |
Target: 5'- aCCCGuuCGGGcugGGCGUGCcgGUCa- -3' miRNA: 3'- -GGGCcuGCUCaa-CCGCGCGuaCAGgc -5' |
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26474 | 3' | -57.8 | NC_005357.1 | + | 39194 | 0.67 | 0.475938 |
Target: 5'- gCUCGGGCaGGUcgaauuauucaucgUGGCGgGCAaGUCCa -3' miRNA: 3'- -GGGCCUGcUCA--------------ACCGCgCGUaCAGGc -5' |
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26474 | 3' | -57.8 | NC_005357.1 | + | 8571 | 0.68 | 0.439656 |
Target: 5'- uCCUGGGCGucGUaGGcCGCGCGUGcggCCu -3' miRNA: 3'- -GGGCCUGCu-CAaCC-GCGCGUACa--GGc -5' |
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26474 | 3' | -57.8 | NC_005357.1 | + | 10580 | 0.68 | 0.439656 |
Target: 5'- cCUCGGGCGuAGUacccaGGCGCGCAg--CCu -3' miRNA: 3'- -GGGCCUGC-UCAa----CCGCGCGUacaGGc -5' |
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26474 | 3' | -57.8 | NC_005357.1 | + | 34556 | 0.68 | 0.430122 |
Target: 5'- cCCUGGACGAGUUcgaguuccugGGUgacuucaaGCGCGUGcgCCu -3' miRNA: 3'- -GGGCCUGCUCAA----------CCG--------CGCGUACa-GGc -5' |
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26474 | 3' | -57.8 | NC_005357.1 | + | 31538 | 0.68 | 0.430122 |
Target: 5'- uUCCGGugGAGgaauacgccGCGCGCAUcgcgCCGa -3' miRNA: 3'- -GGGCCugCUCaac------CGCGCGUAca--GGC- -5' |
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26474 | 3' | -57.8 | NC_005357.1 | + | 38043 | 0.68 | 0.420711 |
Target: 5'- gCCCGGcGCGAcGgcgccUGGCuGCGCAUccgccugccGUCCGg -3' miRNA: 3'- -GGGCC-UGCU-Ca----ACCG-CGCGUA---------CAGGC- -5' |
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26474 | 3' | -57.8 | NC_005357.1 | + | 12275 | 0.72 | 0.24166 |
Target: 5'- uCCUGGGCGGGUugcUGGCccaGCGUG-CCGg -3' miRNA: 3'- -GGGCCUGCUCA---ACCGcg-CGUACaGGC- -5' |
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26474 | 3' | -57.8 | NC_005357.1 | + | 40912 | 0.74 | 0.181136 |
Target: 5'- gCUGGGCGcgaauaAGggGGCGC-CAUGUCCGa -3' miRNA: 3'- gGGCCUGC------UCaaCCGCGcGUACAGGC- -5' |
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26474 | 3' | -57.8 | NC_005357.1 | + | 29591 | 1.11 | 0.000379 |
Target: 5'- gCCCGGACGAGUUGGCGCGCAUGUCCGa -3' miRNA: 3'- -GGGCCUGCUCAACCGCGCGUACAGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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