miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26475 3' -60.1 NC_005357.1 + 41048 0.74 0.11007
Target:  5'- cGUUGUGCGCGU---GGCCGcGGCGCCc -3'
miRNA:   3'- cUAACGCGCGCAccuCCGGC-UCGCGG- -5'
26475 3' -60.1 NC_005357.1 + 28623 0.67 0.327543
Target:  5'- ---cGgGCGCGgauGAGGCCGgccaguuccgcgcgcAGUGCCa -3'
miRNA:   3'- cuaaCgCGCGCac-CUCCGGC---------------UCGCGG- -5'
26475 3' -60.1 NC_005357.1 + 27667 0.67 0.34854
Target:  5'- --gUGgGCGCcaccuccaccGUGGucuuggaauacAGGCCGcGCGCCg -3'
miRNA:   3'- cuaACgCGCG----------CACC-----------UCCGGCuCGCGG- -5'
26475 3' -60.1 NC_005357.1 + 39338 0.66 0.373939
Target:  5'- uGGUUGcCGCGUGUcgaagggcauGGGugcGGCuCGGGCGCUu -3'
miRNA:   3'- -CUAAC-GCGCGCA----------CCU---CCG-GCUCGCGG- -5'
26475 3' -60.1 NC_005357.1 + 21986 0.66 0.382679
Target:  5'- gGAUUcGCGCaGCGUGcGGGUuuCGucGGCGCCu -3'
miRNA:   3'- -CUAA-CGCG-CGCACcUCCG--GC--UCGCGG- -5'
26475 3' -60.1 NC_005357.1 + 27826 0.66 0.382679
Target:  5'- ---cGCGCGCugcccgcgGUGGc-GCCGGccGCGCCg -3'
miRNA:   3'- cuaaCGCGCG--------CACCucCGGCU--CGCGG- -5'
26475 3' -60.1 NC_005357.1 + 12683 0.66 0.391555
Target:  5'- ---gGCGCGUGUcGAGGCC---CGCCu -3'
miRNA:   3'- cuaaCGCGCGCAcCUCCGGcucGCGG- -5'
26475 3' -60.1 NC_005357.1 + 32468 0.66 0.400563
Target:  5'- --cUGC-CGagGUGGGggcGGCCGAuGCGCCc -3'
miRNA:   3'- cuaACGcGCg-CACCU---CCGGCU-CGCGG- -5'
26475 3' -60.1 NC_005357.1 + 38598 0.66 0.400563
Target:  5'- ---aGUGCGC-UGGAuuGGUCGcaacGGCGCCc -3'
miRNA:   3'- cuaaCGCGCGcACCU--CCGGC----UCGCGG- -5'
26475 3' -60.1 NC_005357.1 + 18841 0.68 0.309005
Target:  5'- -uUUGCGCGgcaUGUaGaAGGCCGGGCgGCCc -3'
miRNA:   3'- cuAACGCGC---GCAcC-UCCGGCUCG-CGG- -5'
26475 3' -60.1 NC_005357.1 + 26239 0.68 0.286973
Target:  5'- -uUUGCGCGCGUcGccgaAGGCaCGGGCacccGCCg -3'
miRNA:   3'- cuAACGCGCGCAcC----UCCG-GCUCG----CGG- -5'
26475 3' -60.1 NC_005357.1 + 13295 0.74 0.119648
Target:  5'- cGAUUGCaGCGCGccGGGGCCG-GCGUUg -3'
miRNA:   3'- -CUAACG-CGCGCacCUCCGGCuCGCGG- -5'
26475 3' -60.1 NC_005357.1 + 24116 0.73 0.132528
Target:  5'- --aUGCGCGCGUaGGGgucguaguccagccGGCUGcGCGCCu -3'
miRNA:   3'- cuaACGCGCGCA-CCU--------------CCGGCuCGCGG- -5'
26475 3' -60.1 NC_005357.1 + 4166 0.73 0.133627
Target:  5'- -cUUGCGCGcCGUGGucgAGGUguagccagUGGGCGCCg -3'
miRNA:   3'- cuAACGCGC-GCACC---UCCG--------GCUCGCGG- -5'
26475 3' -60.1 NC_005357.1 + 34501 0.72 0.153211
Target:  5'- ---gGCGUGaagGUGGAcGCCGAGCGCa -3'
miRNA:   3'- cuaaCGCGCg--CACCUcCGGCUCGCGg -5'
26475 3' -60.1 NC_005357.1 + 8137 0.7 0.205671
Target:  5'- uGGUUGUGgGCGUGcGGGuGUCG-GCGCUg -3'
miRNA:   3'- -CUAACGCgCGCAC-CUC-CGGCuCGCGG- -5'
26475 3' -60.1 NC_005357.1 + 16061 0.7 0.222464
Target:  5'- ---cGCGCaCGUGGccGCCGcgcgcGGCGCCg -3'
miRNA:   3'- cuaaCGCGcGCACCucCGGC-----UCGCGG- -5'
26475 3' -60.1 NC_005357.1 + 11172 0.69 0.252389
Target:  5'- cGUUGCGUGCGcUGGucGGCCGuggugauGGUGCg -3'
miRNA:   3'- cUAACGCGCGC-ACCu-CCGGC-------UCGCGg -5'
26475 3' -60.1 NC_005357.1 + 6274 0.69 0.253032
Target:  5'- --cUGCGCGC-UGGgcAGGCCGAacagGuCGCCc -3'
miRNA:   3'- cuaACGCGCGcACC--UCCGGCU----C-GCGG- -5'
26475 3' -60.1 NC_005357.1 + 5353 0.66 0.409703
Target:  5'- ---cGCGCuGCGUGGccGCCugcaccGCGCCc -3'
miRNA:   3'- cuaaCGCG-CGCACCucCGGcu----CGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.