miRNA display CGI


Results 21 - 35 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26475 3' -60.1 NC_005357.1 + 26239 0.68 0.286973
Target:  5'- -uUUGCGCGCGUcGccgaAGGCaCGGGCacccGCCg -3'
miRNA:   3'- cuAACGCGCGCAcC----UCCG-GCUCG----CGG- -5'
26475 3' -60.1 NC_005357.1 + 26618 0.74 0.104088
Target:  5'- --cUGCGCG-GUGGuGGCCGAGgGUa -3'
miRNA:   3'- cuaACGCGCgCACCuCCGGCUCgCGg -5'
26475 3' -60.1 NC_005357.1 + 26873 0.66 0.365335
Target:  5'- uGAcgGCGCcauugaccugGaCGUGGAGGCCG-GCaCCg -3'
miRNA:   3'- -CUaaCGCG----------C-GCACCUCCGGCuCGcGG- -5'
26475 3' -60.1 NC_005357.1 + 27667 0.67 0.34854
Target:  5'- --gUGgGCGCcaccuccaccGUGGucuuggaauacAGGCCGcGCGCCg -3'
miRNA:   3'- cuaACgCGCG----------CACC-----------UCCGGCuCGCGG- -5'
26475 3' -60.1 NC_005357.1 + 27826 0.66 0.382679
Target:  5'- ---cGCGCGCugcccgcgGUGGc-GCCGGccGCGCCg -3'
miRNA:   3'- cuaaCGCGCG--------CACCucCGGCU--CGCGG- -5'
26475 3' -60.1 NC_005357.1 + 28623 0.67 0.327543
Target:  5'- ---cGgGCGCGgauGAGGCCGgccaguuccgcgcgcAGUGCCa -3'
miRNA:   3'- cuaaCgCGCGCac-CUCCGGC---------------UCGCGG- -5'
26475 3' -60.1 NC_005357.1 + 29342 1.11 0.00015
Target:  5'- aGAUUGCGCGCGUGGAGGCCGAGCGCCa -3'
miRNA:   3'- -CUAACGCGCGCACCUCCGGCUCGCGG- -5'
26475 3' -60.1 NC_005357.1 + 32468 0.66 0.400563
Target:  5'- --cUGC-CGagGUGGGggcGGCCGAuGCGCCc -3'
miRNA:   3'- cuaACGcGCg-CACCU---CCGGCU-CGCGG- -5'
26475 3' -60.1 NC_005357.1 + 34223 0.67 0.34854
Target:  5'- ---aGCGCGacuacGAGGCCGuGCGCg -3'
miRNA:   3'- cuaaCGCGCgcac-CUCCGGCuCGCGg -5'
26475 3' -60.1 NC_005357.1 + 34501 0.72 0.153211
Target:  5'- ---gGCGUGaagGUGGAcGCCGAGCGCa -3'
miRNA:   3'- cuaaCGCGCg--CACCUcCGGCUCGCGg -5'
26475 3' -60.1 NC_005357.1 + 34990 0.7 0.200322
Target:  5'- ---aGuCGCGCGUcGAGGaaguguCCGGGCGCCc -3'
miRNA:   3'- cuaaC-GCGCGCAcCUCC------GGCUCGCGG- -5'
26475 3' -60.1 NC_005357.1 + 35346 0.76 0.080774
Target:  5'- ---gGCGCGcCGUGGguAGGCCGcGGCGUCa -3'
miRNA:   3'- cuaaCGCGC-GCACC--UCCGGC-UCGCGG- -5'
26475 3' -60.1 NC_005357.1 + 38598 0.66 0.400563
Target:  5'- ---aGUGCGC-UGGAuuGGUCGcaacGGCGCCc -3'
miRNA:   3'- cuaaCGCGCGcACCU--CCGGC----UCGCGG- -5'
26475 3' -60.1 NC_005357.1 + 39338 0.66 0.373939
Target:  5'- uGGUUGcCGCGUGUcgaagggcauGGGugcGGCuCGGGCGCUu -3'
miRNA:   3'- -CUAAC-GCGCGCA----------CCU---CCG-GCUCGCGG- -5'
26475 3' -60.1 NC_005357.1 + 41048 0.74 0.11007
Target:  5'- cGUUGUGCGCGU---GGCCGcGGCGCCc -3'
miRNA:   3'- cUAACGCGCGCAccuCCGGC-UCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.