miRNA display CGI


Results 81 - 100 of 266 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26477 3' -59.7 NC_005357.1 + 18389 0.68 0.329227
Target:  5'- uGCCgaugGCGCCGgUggcgGCcACGUCGGCg -3'
miRNA:   3'- uCGGa---UGCGGCgGa---UGuUGCGGCCGg -5'
26477 3' -59.7 NC_005357.1 + 23284 0.68 0.329227
Target:  5'- cGGCgUGCGCCacgaauGCCUGuuuGCgGCCGGCa -3'
miRNA:   3'- -UCGgAUGCGG------CGGAUgu-UG-CGGCCGg -5'
26477 3' -59.7 NC_005357.1 + 38719 0.68 0.329227
Target:  5'- gAGCggaUGCGCCGCaugggGCAGCGCgucGCCg -3'
miRNA:   3'- -UCGg--AUGCGGCGga---UGUUGCGgc-CGG- -5'
26477 3' -59.7 NC_005357.1 + 6371 0.68 0.329227
Target:  5'- cGGCCcACGUCGgCaaucagGCGcAgGCCGGCCg -3'
miRNA:   3'- -UCGGaUGCGGCgGa-----UGU-UgCGGCCGG- -5'
26477 3' -59.7 NC_005357.1 + 17267 0.68 0.329227
Target:  5'- aAGCCggggauauUGCCGUCcACGAaGCCGGCg -3'
miRNA:   3'- -UCGGau------GCGGCGGaUGUUgCGGCCGg -5'
26477 3' -59.7 NC_005357.1 + 7514 0.68 0.329227
Target:  5'- uGCCgaggaugGCGuuGUCUACcguGCGCuCGGCg -3'
miRNA:   3'- uCGGa------UGCggCGGAUGu--UGCG-GCCGg -5'
26477 3' -59.7 NC_005357.1 + 37854 0.68 0.313641
Target:  5'- cGCCUgGCGCaccgagcagCGCCUcgGCGACuUCGGCCu -3'
miRNA:   3'- uCGGA-UGCG---------GCGGA--UGUUGcGGCCGG- -5'
26477 3' -59.7 NC_005357.1 + 24139 0.68 0.313641
Target:  5'- cAGCCgGCuGCgCGCCUGgccCAGCGCCucgacGGCUg -3'
miRNA:   3'- -UCGGaUG-CG-GCGGAU---GUUGCGG-----CCGG- -5'
26477 3' -59.7 NC_005357.1 + 25620 0.68 0.291321
Target:  5'- --aCUGCGCCGCCUgggcGCGACcaaCUGGCa -3'
miRNA:   3'- ucgGAUGCGGCGGA----UGUUGc--GGCCGg -5'
26477 3' -59.7 NC_005357.1 + 13432 0.68 0.29862
Target:  5'- cGCCUACGUCGauaacgaggaCUACGACaCCuGGCUg -3'
miRNA:   3'- uCGGAUGCGGCg---------GAUGUUGcGG-CCGG- -5'
26477 3' -59.7 NC_005357.1 + 33405 0.68 0.295684
Target:  5'- cGUCUggugacgaacugguGCGCCGCCUGCuggaAGCGCCcccgcgcGGCg -3'
miRNA:   3'- uCGGA--------------UGCGGCGGAUG----UUGCGG-------CCGg -5'
26477 3' -59.7 NC_005357.1 + 7030 0.68 0.291321
Target:  5'- cGUUUGUGCCGCCUguuGCAgcagGCGCaUGGCCu -3'
miRNA:   3'- uCGGAUGCGGCGGA---UGU----UGCG-GCCGG- -5'
26477 3' -59.7 NC_005357.1 + 32546 0.68 0.321363
Target:  5'- cGCCacGCGCCugGCCgagaaGCAgcGCGCCGGUg -3'
miRNA:   3'- uCGGa-UGCGG--CGGa----UGU--UGCGGCCGg -5'
26477 3' -59.7 NC_005357.1 + 23353 0.68 0.291321
Target:  5'- cGGCCU-CGCCGCCgaugaAC-ACGgUGGCg -3'
miRNA:   3'- -UCGGAuGCGGCGGa----UGuUGCgGCCGg -5'
26477 3' -59.7 NC_005357.1 + 9168 0.68 0.292045
Target:  5'- gGGCCggcagcgacaacuugGCGCCGUC---GACGuuGGCCu -3'
miRNA:   3'- -UCGGa--------------UGCGGCGGaugUUGCggCCGG- -5'
26477 3' -59.7 NC_005357.1 + 30122 0.68 0.296416
Target:  5'- aGGCC-GCGCCagaacacgccgccgGCCUGCAccGCGUCGGaCa -3'
miRNA:   3'- -UCGGaUGCGG--------------CGGAUGU--UGCGGCCgG- -5'
26477 3' -59.7 NC_005357.1 + 6618 0.68 0.30606
Target:  5'- uGGCgUAgucCGCCGCCaGCuucgcGCGCUuGGCCg -3'
miRNA:   3'- -UCGgAU---GCGGCGGaUGu----UGCGG-CCGG- -5'
26477 3' -59.7 NC_005357.1 + 13282 0.68 0.313641
Target:  5'- cGUCUuucaGCGCCGaUUGCAgcGCGCCggGGCCg -3'
miRNA:   3'- uCGGA----UGCGGCgGAUGU--UGCGG--CCGG- -5'
26477 3' -59.7 NC_005357.1 + 20236 0.68 0.313641
Target:  5'- uGGCCUugGgUGCCuUGCuccuGgGUCGGCUg -3'
miRNA:   3'- -UCGGAugCgGCGG-AUGu---UgCGGCCGG- -5'
26477 3' -59.7 NC_005357.1 + 31078 0.68 0.313641
Target:  5'- gGGCCUGgugcCGCUGCUcaccucggUGCAG-GCCGGCg -3'
miRNA:   3'- -UCGGAU----GCGGCGG--------AUGUUgCGGCCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.