miRNA display CGI


Results 101 - 120 of 266 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26477 3' -59.7 NC_005357.1 + 37798 0.68 0.313641
Target:  5'- uGCCgACcCUGCg-GCAGCGCgGGCCa -3'
miRNA:   3'- uCGGaUGcGGCGgaUGUUGCGgCCGG- -5'
26477 3' -59.7 NC_005357.1 + 33034 0.68 0.313641
Target:  5'- cGGCCUGCGCgacaugcagUGgCUGCAcaAUGCacgCGGCCg -3'
miRNA:   3'- -UCGGAUGCG---------GCgGAUGU--UGCG---GCCGG- -5'
26477 3' -59.7 NC_005357.1 + 14083 0.68 0.321363
Target:  5'- cGC--GCGCUGCCcgACGAgGCCaaGGCCa -3'
miRNA:   3'- uCGgaUGCGGCGGa-UGUUgCGG--CCGG- -5'
26477 3' -59.7 NC_005357.1 + 12684 0.68 0.321363
Target:  5'- cAGCCgAgGCCGaguuCUACGGCG-UGGCCg -3'
miRNA:   3'- -UCGGaUgCGGCg---GAUGUUGCgGCCGG- -5'
26477 3' -59.7 NC_005357.1 + 25991 0.68 0.321363
Target:  5'- cGCCguguucaACGCCGCCgGCGAuuacccCGC-GGCCg -3'
miRNA:   3'- uCGGa------UGCGGCGGaUGUU------GCGgCCGG- -5'
26477 3' -59.7 NC_005357.1 + 7514 0.68 0.329227
Target:  5'- uGCCgaggaugGCGuuGUCUACcguGCGCuCGGCg -3'
miRNA:   3'- uCGGa------UGCggCGGAUGu--UGCG-GCCGg -5'
26477 3' -59.7 NC_005357.1 + 40446 0.68 0.291321
Target:  5'- cGaCCU-CGCgCGCCUACAGCguGCCuucccccagGGCCg -3'
miRNA:   3'- uC-GGAuGCG-GCGGAUGUUG--CGG---------CCGG- -5'
26477 3' -59.7 NC_005357.1 + 23353 0.68 0.291321
Target:  5'- cGGCCU-CGCCGCCgaugaAC-ACGgUGGCg -3'
miRNA:   3'- -UCGGAuGCGGCGGa----UGuUGCgGCCGg -5'
26477 3' -59.7 NC_005357.1 + 18389 0.68 0.329227
Target:  5'- uGCCgaugGCGCCGgUggcgGCcACGUCGGCg -3'
miRNA:   3'- uCGGa---UGCGGCgGa---UGuUGCGGCCGg -5'
26477 3' -59.7 NC_005357.1 + 26378 0.68 0.30606
Target:  5'- cGGCCacgUGCGCgaacugGCCUACAACugGCaGGCCa -3'
miRNA:   3'- -UCGG---AUGCGg-----CGGAUGUUG--CGgCCGG- -5'
26477 3' -59.7 NC_005357.1 + 8622 0.68 0.321363
Target:  5'- cGCUUcucgGCCGCUgcggugGCGAgguCGCCGGCCu -3'
miRNA:   3'- uCGGAug--CGGCGGa-----UGUU---GCGGCCGG- -5'
26477 3' -59.7 NC_005357.1 + 3992 0.68 0.321363
Target:  5'- cAGCagauagAUGuCCGCCcaaaAC-GCGCCGGCCa -3'
miRNA:   3'- -UCGga----UGC-GGCGGa---UGuUGCGGCCGG- -5'
26477 3' -59.7 NC_005357.1 + 37854 0.68 0.313641
Target:  5'- cGCCUgGCGCaccgagcagCGCCUcgGCGACuUCGGCCu -3'
miRNA:   3'- uCGGA-UGCG---------GCGGA--UGUUGcGGCCGG- -5'
26477 3' -59.7 NC_005357.1 + 24139 0.68 0.313641
Target:  5'- cAGCCgGCuGCgCGCCUGgccCAGCGCCucgacGGCUg -3'
miRNA:   3'- -UCGGaUG-CG-GCGGAU---GUUGCGG-----CCGG- -5'
26477 3' -59.7 NC_005357.1 + 20236 0.68 0.313641
Target:  5'- uGGCCUugGgUGCCuUGCuccuGgGUCGGCUg -3'
miRNA:   3'- -UCGGAugCgGCGG-AUGu---UgCGGCCGG- -5'
26477 3' -59.7 NC_005357.1 + 13282 0.68 0.313641
Target:  5'- cGUCUuucaGCGCCGaUUGCAgcGCGCCggGGCCg -3'
miRNA:   3'- uCGGA----UGCGGCgGAUGU--UGCGG--CCGG- -5'
26477 3' -59.7 NC_005357.1 + 6618 0.68 0.30606
Target:  5'- uGGCgUAgucCGCCGCCaGCuucgcGCGCUuGGCCg -3'
miRNA:   3'- -UCGgAU---GCGGCGGaUGu----UGCGG-CCGG- -5'
26477 3' -59.7 NC_005357.1 + 30122 0.68 0.296416
Target:  5'- aGGCC-GCGCCagaacacgccgccgGCCUGCAccGCGUCGGaCa -3'
miRNA:   3'- -UCGGaUGCGG--------------CGGAUGU--UGCGGCCgG- -5'
26477 3' -59.7 NC_005357.1 + 9168 0.68 0.292045
Target:  5'- gGGCCggcagcgacaacuugGCGCCGUC---GACGuuGGCCu -3'
miRNA:   3'- -UCGGa--------------UGCGGCGGaugUUGCggCCGG- -5'
26477 3' -59.7 NC_005357.1 + 8960 0.69 0.25045
Target:  5'- uGGCCgugcCGCgauaGCCaGCGugGCCGuGCCg -3'
miRNA:   3'- -UCGGau--GCGg---CGGaUGUugCGGC-CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.