Results 121 - 140 of 266 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
26477 | 3' | -59.7 | NC_005357.1 | + | 4254 | 0.69 | 0.284163 |
Target: 5'- uAGUCggUGCCgGCCguCAGCGCCGGCa -3' miRNA: 3'- -UCGGauGCGG-CGGauGUUGCGGCCGg -5' |
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26477 | 3' | -59.7 | NC_005357.1 | + | 8960 | 0.69 | 0.25045 |
Target: 5'- uGGCCgugcCGCgauaGCCaGCGugGCCGuGCCg -3' miRNA: 3'- -UCGGau--GCGg---CGGaUGUugCGGC-CGG- -5' |
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26477 | 3' | -59.7 | NC_005357.1 | + | 14143 | 0.69 | 0.263523 |
Target: 5'- aAGuUCUGCGCCGUgUccCAGCGCgCGGUCa -3' miRNA: 3'- -UC-GGAUGCGGCGgAu-GUUGCG-GCCGG- -5' |
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26477 | 3' | -59.7 | NC_005357.1 | + | 36047 | 0.69 | 0.256918 |
Target: 5'- cGCCgcgGCgGCCGaCCUGguguaaccCAGCGCCccGGCCu -3' miRNA: 3'- uCGGa--UG-CGGC-GGAU--------GUUGCGG--CCGG- -5' |
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26477 | 3' | -59.7 | NC_005357.1 | + | 28342 | 0.69 | 0.25045 |
Target: 5'- uGGCCUugGCCucGUCggGCAGCGCgCGGa- -3' miRNA: 3'- -UCGGAugCGG--CGGa-UGUUGCG-GCCgg -5' |
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26477 | 3' | -59.7 | NC_005357.1 | + | 34993 | 0.69 | 0.25045 |
Target: 5'- aGGCCgaaGCCGaaCUGCug-GCCGGCCa -3' miRNA: 3'- -UCGGaugCGGCg-GAUGuugCGGCCGG- -5' |
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26477 | 3' | -59.7 | NC_005357.1 | + | 7242 | 0.69 | 0.25045 |
Target: 5'- cGGCCacugGCGCgGgCCgauguCGCCGGCCu -3' miRNA: 3'- -UCGGa---UGCGgC-GGauguuGCGGCCGG- -5' |
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26477 | 3' | -59.7 | NC_005357.1 | + | 24551 | 0.69 | 0.25045 |
Target: 5'- uGGUCgcgcaGCGCgGCgaugGCGAgGCCGGCCa -3' miRNA: 3'- -UCGGa----UGCGgCGga--UGUUgCGGCCGG- -5' |
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26477 | 3' | -59.7 | NC_005357.1 | + | 5502 | 0.69 | 0.284163 |
Target: 5'- cGGCg-AUGCUGCCaaagucguaggAC-ACGCCGGCCg -3' miRNA: 3'- -UCGgaUGCGGCGGa----------UGuUGCGGCCGG- -5' |
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26477 | 3' | -59.7 | NC_005357.1 | + | 34750 | 0.69 | 0.253021 |
Target: 5'- cGGCCgcagauCGCCGCCaaagaacggcgcgugUACGGCaaggaGCCGGCg -3' miRNA: 3'- -UCGGau----GCGGCGG---------------AUGUUG-----CGGCCGg -5' |
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26477 | 3' | -59.7 | NC_005357.1 | + | 37539 | 0.69 | 0.284163 |
Target: 5'- uGGCCgaaaacgAgGCCGCCgucGCcGCGCUGGgCa -3' miRNA: 3'- -UCGGa------UgCGGCGGa--UGuUGCGGCCgG- -5' |
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26477 | 3' | -59.7 | NC_005357.1 | + | 35584 | 0.69 | 0.283455 |
Target: 5'- gGGCCUAcgaaaaggcCGUCGCCgaggGCAACGacgaaacCCGcGCCg -3' miRNA: 3'- -UCGGAU---------GCGGCGGa---UGUUGC-------GGC-CGG- -5' |
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26477 | 3' | -59.7 | NC_005357.1 | + | 41379 | 0.69 | 0.277144 |
Target: 5'- cGCCgguuCGCgGCgacaUGCugcCGCCGGCCg -3' miRNA: 3'- uCGGau--GCGgCGg---AUGuu-GCGGCCGG- -5' |
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26477 | 3' | -59.7 | NC_005357.1 | + | 32090 | 0.69 | 0.263523 |
Target: 5'- aGGCacACGCCGCagcgACGGCuaCGGCCu -3' miRNA: 3'- -UCGgaUGCGGCGga--UGUUGcgGCCGG- -5' |
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26477 | 3' | -59.7 | NC_005357.1 | + | 23623 | 0.69 | 0.263523 |
Target: 5'- -uCCUGCGCCGCCagaucaccaACAAgGUggCGGCCu -3' miRNA: 3'- ucGGAUGCGGCGGa--------UGUUgCG--GCCGG- -5' |
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26477 | 3' | -59.7 | NC_005357.1 | + | 14727 | 0.69 | 0.270264 |
Target: 5'- cGGCga--GCCGCUgcCGGCGCgCGGCCu -3' miRNA: 3'- -UCGgaugCGGCGGauGUUGCG-GCCGG- -5' |
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26477 | 3' | -59.7 | NC_005357.1 | + | 13884 | 0.69 | 0.266203 |
Target: 5'- uGGCCgGCgGCCGCaaggUcgugccguucaacaaGCAGCGCCGGCa -3' miRNA: 3'- -UCGGaUG-CGGCGg---A---------------UGUUGCGGCCGg -5' |
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26477 | 3' | -59.7 | NC_005357.1 | + | 23043 | 0.69 | 0.277144 |
Target: 5'- -aCCUACGCCGaaguggACAAgGCCcuGGCCg -3' miRNA: 3'- ucGGAUGCGGCgga---UGUUgCGG--CCGG- -5' |
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26477 | 3' | -59.7 | NC_005357.1 | + | 33830 | 0.69 | 0.284163 |
Target: 5'- cGCCUACGCCaucCCcACGGuCGCCGuGaCCg -3' miRNA: 3'- uCGGAUGCGGc--GGaUGUU-GCGGC-C-GG- -5' |
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26477 | 3' | -59.7 | NC_005357.1 | + | 18774 | 0.69 | 0.27645 |
Target: 5'- cGCCUGgugcaguUGCUGCCcGC--CGCCGGCUa -3' miRNA: 3'- uCGGAU-------GCGGCGGaUGuuGCGGCCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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