Results 141 - 160 of 266 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26477 | 3' | -59.7 | NC_005357.1 | + | 35060 | 0.69 | 0.277144 |
Target: 5'- uGCC--CGCCGCUggacgaACGACGCCgaggucgaGGCCg -3' miRNA: 3'- uCGGauGCGGCGGa-----UGUUGCGG--------CCGG- -5' |
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26477 | 3' | -59.7 | NC_005357.1 | + | 35244 | 0.69 | 0.277144 |
Target: 5'- aAGCCcaGCGUCGCCcccgaauccgACaAGCGCCcGGCCc -3' miRNA: 3'- -UCGGa-UGCGGCGGa---------UG-UUGCGG-CCGG- -5' |
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26477 | 3' | -59.7 | NC_005357.1 | + | 12882 | 0.69 | 0.282042 |
Target: 5'- gAGCCacaggcucgugguguCGUCGCCUuugGCGauGCGCuCGGCCg -3' miRNA: 3'- -UCGGau-------------GCGGCGGA---UGU--UGCG-GCCGG- -5' |
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26477 | 3' | -59.7 | NC_005357.1 | + | 1096 | 0.69 | 0.284163 |
Target: 5'- uGCCUugGCCGUgUcgcgcgGCAugucGCGCauCGGCCc -3' miRNA: 3'- uCGGAugCGGCGgA------UGU----UGCG--GCCGG- -5' |
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26477 | 3' | -59.7 | NC_005357.1 | + | 4254 | 0.69 | 0.284163 |
Target: 5'- uAGUCggUGCCgGCCguCAGCGCCGGCa -3' miRNA: 3'- -UCGGauGCGG-CGGauGUUGCGGCCGg -5' |
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26477 | 3' | -59.7 | NC_005357.1 | + | 38334 | 0.69 | 0.284163 |
Target: 5'- -uUCaGCGCCGCCcACcugGCCGGCCu -3' miRNA: 3'- ucGGaUGCGGCGGaUGuugCGGCCGG- -5' |
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26477 | 3' | -59.7 | NC_005357.1 | + | 5502 | 0.69 | 0.284163 |
Target: 5'- cGGCg-AUGCUGCCaaagucguaggAC-ACGCCGGCCg -3' miRNA: 3'- -UCGgaUGCGGCGGa----------UGuUGCGGCCGG- -5' |
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26477 | 3' | -59.7 | NC_005357.1 | + | 33830 | 0.69 | 0.284163 |
Target: 5'- cGCCUACGCCaucCCcACGGuCGCCGuGaCCg -3' miRNA: 3'- uCGGAUGCGGc--GGaUGUU-GCGGC-C-GG- -5' |
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26477 | 3' | -59.7 | NC_005357.1 | + | 33786 | 0.69 | 0.273 |
Target: 5'- gAGUacgGCGCgGCCUGgGGCGuuuccgaagggcguaCCGGCCa -3' miRNA: 3'- -UCGga-UGCGgCGGAUgUUGC---------------GGCCGG- -5' |
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26477 | 3' | -59.7 | NC_005357.1 | + | 39594 | 0.69 | 0.270264 |
Target: 5'- uGCUgGCGCCGCUgcGCGugGCCgcgagcaccuGGCCc -3' miRNA: 3'- uCGGaUGCGGCGGa-UGUugCGG----------CCGG- -5' |
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26477 | 3' | -59.7 | NC_005357.1 | + | 28852 | 0.69 | 0.270264 |
Target: 5'- uGCCgaaGCUGUCc-CAGCGCCGcGCCa -3' miRNA: 3'- uCGGaugCGGCGGauGUUGCGGC-CGG- -5' |
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26477 | 3' | -59.7 | NC_005357.1 | + | 980 | 0.69 | 0.263523 |
Target: 5'- cAGCCacUugGCCGCCUgGCggUGCCguGGUUc -3' miRNA: 3'- -UCGG--AugCGGCGGA-UGuuGCGG--CCGG- -5' |
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26477 | 3' | -59.7 | NC_005357.1 | + | 25824 | 0.69 | 0.25045 |
Target: 5'- uGCaCcGgGCCGCCguuGGCGCCGGUCa -3' miRNA: 3'- uCG-GaUgCGGCGGaugUUGCGGCCGG- -5' |
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26477 | 3' | -59.7 | NC_005357.1 | + | 28342 | 0.69 | 0.25045 |
Target: 5'- uGGCCUugGCCucGUCggGCAGCGCgCGGa- -3' miRNA: 3'- -UCGGAugCGG--CGGa-UGUUGCG-GCCgg -5' |
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26477 | 3' | -59.7 | NC_005357.1 | + | 24551 | 0.69 | 0.25045 |
Target: 5'- uGGUCgcgcaGCGCgGCgaugGCGAgGCCGGCCa -3' miRNA: 3'- -UCGGa----UGCGgCGga--UGUUgCGGCCGG- -5' |
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26477 | 3' | -59.7 | NC_005357.1 | + | 36047 | 0.69 | 0.256918 |
Target: 5'- cGCCgcgGCgGCCGaCCUGguguaaccCAGCGCCccGGCCu -3' miRNA: 3'- uCGGa--UG-CGGC-GGAU--------GUUGCGG--CCGG- -5' |
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26477 | 3' | -59.7 | NC_005357.1 | + | 26241 | 0.69 | 0.263523 |
Target: 5'- uGCgcGCGUCGCCgaagGCAcgggcaccCGCCGGCCu -3' miRNA: 3'- uCGgaUGCGGCGGa---UGUu-------GCGGCCGG- -5' |
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26477 | 3' | -59.7 | NC_005357.1 | + | 33870 | 0.69 | 0.263523 |
Target: 5'- cGCCUGuCGCUGCCcgccauCGGCGC-GGCUg -3' miRNA: 3'- uCGGAU-GCGGCGGau----GUUGCGgCCGG- -5' |
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26477 | 3' | -59.7 | NC_005357.1 | + | 38387 | 0.7 | 0.237917 |
Target: 5'- uGGCCUGcCGCuCGCC-GCG--GCCGGCUu -3' miRNA: 3'- -UCGGAU-GCG-GCGGaUGUugCGGCCGG- -5' |
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26477 | 3' | -59.7 | NC_005357.1 | + | 32307 | 0.7 | 0.237917 |
Target: 5'- cGaCCUcauCGCCGCCauCAAgGCCGGCg -3' miRNA: 3'- uC-GGAu--GCGGCGGauGUUgCGGCCGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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