miRNA display CGI


Results 61 - 80 of 266 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26477 3' -59.7 NC_005357.1 + 2141 0.72 0.164286
Target:  5'- cAGCCggucaaccGCGCCGCCgUAC-ACGuuGGCg -3'
miRNA:   3'- -UCGGa-------UGCGGCGG-AUGuUGCggCCGg -5'
26477 3' -59.7 NC_005357.1 + 25485 0.72 0.168783
Target:  5'- cGGCggcACGCUGCUggACGGCGCCGuGCCc -3'
miRNA:   3'- -UCGga-UGCGGCGGa-UGUUGCGGC-CGG- -5'
26477 3' -59.7 NC_005357.1 + 40961 0.72 0.167423
Target:  5'- cGGCCUGCcaggagGCCGCCgACcGCGCCGucaagaagguguuuGCCa -3'
miRNA:   3'- -UCGGAUG------CGGCGGaUGuUGCGGC--------------CGG- -5'
26477 3' -59.7 NC_005357.1 + 23198 0.72 0.162958
Target:  5'- gGGCCUgACGCCGCgCUuCAACaGCCuguccgcggagaacGGCCa -3'
miRNA:   3'- -UCGGA-UGCGGCG-GAuGUUG-CGG--------------CCGG- -5'
26477 3' -59.7 NC_005357.1 + 7706 0.72 0.17339
Target:  5'- cGGCCggcuUGCCGaugaaCUGCAGCGCacgcucggCGGCCg -3'
miRNA:   3'- -UCGGau--GCGGCg----GAUGUUGCG--------GCCGG- -5'
26477 3' -59.7 NC_005357.1 + 28114 0.72 0.168783
Target:  5'- cAGCCaagGCGCgCGCCaguucagcaACGACGUgGGCCg -3'
miRNA:   3'- -UCGGa--UGCG-GCGGa--------UGUUGCGgCCGG- -5'
26477 3' -59.7 NC_005357.1 + 4386 0.72 0.17339
Target:  5'- cAGCCagGCGCCGUC----GCGCCgGGCCu -3'
miRNA:   3'- -UCGGa-UGCGGCGGauguUGCGG-CCGG- -5'
26477 3' -59.7 NC_005357.1 + 6231 0.71 0.19814
Target:  5'- uGCCUucgGCCaggGCCUGC-ACGCCGGUa -3'
miRNA:   3'- uCGGAug-CGG---CGGAUGuUGCGGCCGg -5'
26477 3' -59.7 NC_005357.1 + 11492 0.71 0.182453
Target:  5'- cGCCUGCGacaCCGCaaaggGCAGCGCCugcgcuggcgugaGGCCc -3'
miRNA:   3'- uCGGAUGC---GGCGga---UGUUGCGG-------------CCGG- -5'
26477 3' -59.7 NC_005357.1 + 40662 0.71 0.208874
Target:  5'- cGGCCcgACG-CGCCagGCGcAgGCCGGCCa -3'
miRNA:   3'- -UCGGa-UGCgGCGGa-UGU-UgCGGCCGG- -5'
26477 3' -59.7 NC_005357.1 + 36228 0.71 0.208874
Target:  5'- gAGCCgcGCGCCGUcaccugcaaacgCUGCGGCaagaCCGGCCu -3'
miRNA:   3'- -UCGGa-UGCGGCG------------GAUGUUGc---GGCCGG- -5'
26477 3' -59.7 NC_005357.1 + 13053 0.71 0.203445
Target:  5'- uGCUugagUGCgGCCGUCUGCAuguugaauugGCGCuCGGCCu -3'
miRNA:   3'- uCGG----AUG-CGGCGGAUGU----------UGCG-GCCGG- -5'
26477 3' -59.7 NC_005357.1 + 39681 0.71 0.203445
Target:  5'- uGGUCggcACGCC-CgaGCAGCGCCgGGCCg -3'
miRNA:   3'- -UCGGa--UGCGGcGgaUGUUGCGG-CCGG- -5'
26477 3' -59.7 NC_005357.1 + 32541 0.71 0.19814
Target:  5'- cGGCCaggAUGCUGCCgccgGCGAUGCCGcuCCg -3'
miRNA:   3'- -UCGGa--UGCGGCGGa---UGUUGCGGCc-GG- -5'
26477 3' -59.7 NC_005357.1 + 32358 0.71 0.19814
Target:  5'- cGCUgcgguCGCCGCCga-GGCcCCGGCCg -3'
miRNA:   3'- uCGGau---GCGGCGGaugUUGcGGCCGG- -5'
26477 3' -59.7 NC_005357.1 + 26158 0.71 0.192955
Target:  5'- cGGCU--CGCCGUCUGCGAUG-CGGUCg -3'
miRNA:   3'- -UCGGauGCGGCGGAUGUUGCgGCCGG- -5'
26477 3' -59.7 NC_005357.1 + 33914 0.71 0.191423
Target:  5'- cGCCUACGCCacgGCCcaccgcaucUGCAuuucuucauuacucGCGUCGGCUg -3'
miRNA:   3'- uCGGAUGCGG---CGG---------AUGU--------------UGCGGCCGG- -5'
26477 3' -59.7 NC_005357.1 + 32118 0.71 0.191423
Target:  5'- uGGCCgcUGCCGaCCU-CGACGCCcccgaaucccucaaGGCCg -3'
miRNA:   3'- -UCGGauGCGGC-GGAuGUUGCGG--------------CCGG- -5'
26477 3' -59.7 NC_005357.1 + 12201 0.71 0.189901
Target:  5'- cGGCCcGCGCUGCCUgccccuggucgggacGCAGCacaCCGGCa -3'
miRNA:   3'- -UCGGaUGCGGCGGA---------------UGUUGc--GGCCGg -5'
26477 3' -59.7 NC_005357.1 + 30444 0.71 0.187889
Target:  5'- gGGCCU-CGCCcugaaucaguuGCCagGgGGCGCCGGUCa -3'
miRNA:   3'- -UCGGAuGCGG-----------CGGa-UgUUGCGGCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.