miRNA display CGI


Results 81 - 100 of 266 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26477 3' -59.7 NC_005357.1 + 32541 0.71 0.19814
Target:  5'- cGGCCaggAUGCUGCCgccgGCGAUGCCGcuCCg -3'
miRNA:   3'- -UCGGa--UGCGGCGGa---UGUUGCGGCc-GG- -5'
26477 3' -59.7 NC_005357.1 + 39681 0.71 0.203445
Target:  5'- uGGUCggcACGCC-CgaGCAGCGCCgGGCCg -3'
miRNA:   3'- -UCGGa--UGCGGcGgaUGUUGCGG-CCGG- -5'
26477 3' -59.7 NC_005357.1 + 13053 0.71 0.203445
Target:  5'- uGCUugagUGCgGCCGUCUGCAuguugaauugGCGCuCGGCCu -3'
miRNA:   3'- uCGG----AUG-CGGCGGAUGU----------UGCG-GCCGG- -5'
26477 3' -59.7 NC_005357.1 + 36228 0.71 0.208874
Target:  5'- gAGCCgcGCGCCGUcaccugcaaacgCUGCGGCaagaCCGGCCu -3'
miRNA:   3'- -UCGGa-UGCGGCG------------GAUGUUGc---GGCCGG- -5'
26477 3' -59.7 NC_005357.1 + 33914 0.71 0.191423
Target:  5'- cGCCUACGCCacgGCCcaccgcaucUGCAuuucuucauuacucGCGUCGGCUg -3'
miRNA:   3'- uCGGAUGCGG---CGG---------AUGU--------------UGCGGCCGG- -5'
26477 3' -59.7 NC_005357.1 + 26158 0.71 0.192955
Target:  5'- cGGCU--CGCCGUCUGCGAUG-CGGUCg -3'
miRNA:   3'- -UCGGauGCGGCGGAUGUUGCgGCCGG- -5'
26477 3' -59.7 NC_005357.1 + 19329 0.71 0.192955
Target:  5'- cGCCguggGCGCCGCCguuGGCGUCGGg- -3'
miRNA:   3'- uCGGa---UGCGGCGGaugUUGCGGCCgg -5'
26477 3' -59.7 NC_005357.1 + 38056 0.71 0.192955
Target:  5'- aAGUCggcCGUCGCCUucacgcgcaccgGCAACGCaaCGGCCa -3'
miRNA:   3'- -UCGGau-GCGGCGGA------------UGUUGCG--GCCGG- -5'
26477 3' -59.7 NC_005357.1 + 18866 0.71 0.187889
Target:  5'- cGCCcGCaCCuGCCgGCGAUGUCGGCCg -3'
miRNA:   3'- uCGGaUGcGG-CGGaUGUUGCGGCCGG- -5'
26477 3' -59.7 NC_005357.1 + 11857 0.71 0.187889
Target:  5'- cAGCCcACcaucuGCCGCauCUACAGCgGCCGGCa -3'
miRNA:   3'- -UCGGaUG-----CGGCG--GAUGUUG-CGGCCGg -5'
26477 3' -59.7 NC_005357.1 + 13141 0.71 0.182941
Target:  5'- gGGCCagcaguuCGUCGCCUACcACGuccaccccgacaCCGGCCg -3'
miRNA:   3'- -UCGGau-----GCGGCGGAUGuUGC------------GGCCGG- -5'
26477 3' -59.7 NC_005357.1 + 8830 0.7 0.23185
Target:  5'- gGGUCgg-GCCaGCC-GCAACGCgGGCCa -3'
miRNA:   3'- -UCGGaugCGG-CGGaUGUUGCGgCCGG- -5'
26477 3' -59.7 NC_005357.1 + 38387 0.7 0.237917
Target:  5'- uGGCCUGcCGCuCGCC-GCG--GCCGGCUu -3'
miRNA:   3'- -UCGGAU-GCG-GCGGaUGUugCGGCCGG- -5'
26477 3' -59.7 NC_005357.1 + 18263 0.7 0.214427
Target:  5'- cGaCCUGCGCCGagaACu-UGCCGGCCg -3'
miRNA:   3'- uC-GGAUGCGGCggaUGuuGCGGCCGG- -5'
26477 3' -59.7 NC_005357.1 + 25529 0.7 0.214427
Target:  5'- cGGUUUugcCGCCGCCgGCAGCGCCcccguaGCCg -3'
miRNA:   3'- -UCGGAu--GCGGCGGaUGUUGCGGc-----CGG- -5'
26477 3' -59.7 NC_005357.1 + 32307 0.7 0.237917
Target:  5'- cGaCCUcauCGCCGCCauCAAgGCCGGCg -3'
miRNA:   3'- uC-GGAu--GCGGCGGauGUUgCGGCCGg -5'
26477 3' -59.7 NC_005357.1 + 14531 0.7 0.237917
Target:  5'- cAGCC-ACGUCGCCg---GCGCCGGaCa -3'
miRNA:   3'- -UCGGaUGCGGCGGauguUGCGGCCgG- -5'
26477 3' -59.7 NC_005357.1 + 4117 0.7 0.225913
Target:  5'- cAGCCUGCGCUGCagcguUGCuuC-CCGGCg -3'
miRNA:   3'- -UCGGAUGCGGCGg----AUGuuGcGGCCGg -5'
26477 3' -59.7 NC_005357.1 + 1179 0.7 0.23185
Target:  5'- uAGUCU-CGCCGCCg---GgGUCGGCCg -3'
miRNA:   3'- -UCGGAuGCGGCGGauguUgCGGCCGG- -5'
26477 3' -59.7 NC_005357.1 + 8180 0.7 0.220106
Target:  5'- cGCCcggAUGCUGCCgGCGauuucaucGCGCaCGGCCu -3'
miRNA:   3'- uCGGa--UGCGGCGGaUGU--------UGCG-GCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.