miRNA display CGI


Results 101 - 120 of 266 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26477 3' -59.7 NC_005357.1 + 38387 0.7 0.237917
Target:  5'- uGGCCUGcCGCuCGCC-GCG--GCCGGCUu -3'
miRNA:   3'- -UCGGAU-GCG-GCGGaUGUugCGGCCGG- -5'
26477 3' -59.7 NC_005357.1 + 25529 0.7 0.214427
Target:  5'- cGGUUUugcCGCCGCCgGCAGCGCCcccguaGCCg -3'
miRNA:   3'- -UCGGAu--GCGGCGGaUGUUGCGGc-----CGG- -5'
26477 3' -59.7 NC_005357.1 + 41923 0.7 0.214427
Target:  5'- cGCCUGCaaGCCGCC-GCGGCGCaguaugcuGCCg -3'
miRNA:   3'- uCGGAUG--CGGCGGaUGUUGCGgc------CGG- -5'
26477 3' -59.7 NC_005357.1 + 31021 0.7 0.214427
Target:  5'- gGGCUUGC-CgGCCgagGCAaucGCGCgGGCCa -3'
miRNA:   3'- -UCGGAUGcGgCGGa--UGU---UGCGgCCGG- -5'
26477 3' -59.7 NC_005357.1 + 8679 0.7 0.237917
Target:  5'- cGGCugCUGCGCCGCCcagguguGCGCCGcGCa -3'
miRNA:   3'- -UCG--GAUGCGGCGGaugu---UGCGGC-CGg -5'
26477 3' -59.7 NC_005357.1 + 22652 0.7 0.236693
Target:  5'- cGGCCUGgcaaucagugaaGaCCGCCU-CGugGCCGGCa -3'
miRNA:   3'- -UCGGAUg-----------C-GGCGGAuGUugCGGCCGg -5'
26477 3' -59.7 NC_005357.1 + 18584 0.7 0.225913
Target:  5'- gGGUUU-CGCCuGCCUGCuggucACGCCGGUg -3'
miRNA:   3'- -UCGGAuGCGG-CGGAUGu----UGCGGCCGg -5'
26477 3' -59.7 NC_005357.1 + 15429 0.7 0.224158
Target:  5'- -uCC-GCGCCGCUguagccccaguucuUGCAGCGUCGGUCg -3'
miRNA:   3'- ucGGaUGCGGCGG--------------AUGUUGCGGCCGG- -5'
26477 3' -59.7 NC_005357.1 + 1096 0.69 0.284163
Target:  5'- uGCCUugGCCGUgUcgcgcgGCAugucGCGCauCGGCCc -3'
miRNA:   3'- uCGGAugCGGCGgA------UGU----UGCG--GCCGG- -5'
26477 3' -59.7 NC_005357.1 + 33830 0.69 0.284163
Target:  5'- cGCCUACGCCaucCCcACGGuCGCCGuGaCCg -3'
miRNA:   3'- uCGGAUGCGGc--GGaUGUU-GCGGC-C-GG- -5'
26477 3' -59.7 NC_005357.1 + 5502 0.69 0.284163
Target:  5'- cGGCg-AUGCUGCCaaagucguaggAC-ACGCCGGCCg -3'
miRNA:   3'- -UCGgaUGCGGCGGa----------UGuUGCGGCCGG- -5'
26477 3' -59.7 NC_005357.1 + 38334 0.69 0.284163
Target:  5'- -uUCaGCGCCGCCcACcugGCCGGCCu -3'
miRNA:   3'- ucGGaUGCGGCGGaUGuugCGGCCGG- -5'
26477 3' -59.7 NC_005357.1 + 4254 0.69 0.284163
Target:  5'- uAGUCggUGCCgGCCguCAGCGCCGGCa -3'
miRNA:   3'- -UCGGauGCGG-CGGauGUUGCGGCCGg -5'
26477 3' -59.7 NC_005357.1 + 34993 0.69 0.25045
Target:  5'- aGGCCgaaGCCGaaCUGCug-GCCGGCCa -3'
miRNA:   3'- -UCGGaugCGGCg-GAUGuugCGGCCGG- -5'
26477 3' -59.7 NC_005357.1 + 25824 0.69 0.25045
Target:  5'- uGCaCcGgGCCGCCguuGGCGCCGGUCa -3'
miRNA:   3'- uCG-GaUgCGGCGGaugUUGCGGCCGG- -5'
26477 3' -59.7 NC_005357.1 + 12882 0.69 0.282042
Target:  5'- gAGCCacaggcucgugguguCGUCGCCUuugGCGauGCGCuCGGCCg -3'
miRNA:   3'- -UCGGau-------------GCGGCGGA---UGU--UGCG-GCCGG- -5'
26477 3' -59.7 NC_005357.1 + 24551 0.69 0.25045
Target:  5'- uGGUCgcgcaGCGCgGCgaugGCGAgGCCGGCCa -3'
miRNA:   3'- -UCGGa----UGCGgCGga--UGUUgCGGCCGG- -5'
26477 3' -59.7 NC_005357.1 + 36047 0.69 0.256918
Target:  5'- cGCCgcgGCgGCCGaCCUGguguaaccCAGCGCCccGGCCu -3'
miRNA:   3'- uCGGa--UG-CGGC-GGAU--------GUUGCGG--CCGG- -5'
26477 3' -59.7 NC_005357.1 + 35244 0.69 0.277144
Target:  5'- aAGCCcaGCGUCGCCcccgaauccgACaAGCGCCcGGCCc -3'
miRNA:   3'- -UCGGa-UGCGGCGGa---------UG-UUGCGG-CCGG- -5'
26477 3' -59.7 NC_005357.1 + 28342 0.69 0.25045
Target:  5'- uGGCCUugGCCucGUCggGCAGCGCgCGGa- -3'
miRNA:   3'- -UCGGAugCGG--CGGa-UGUUGCG-GCCgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.