miRNA display CGI


Results 121 - 140 of 266 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26477 3' -59.7 NC_005357.1 + 39594 0.69 0.270264
Target:  5'- uGCUgGCGCCGCUgcGCGugGCCgcgagcaccuGGCCc -3'
miRNA:   3'- uCGGaUGCGGCGGa-UGUugCGG----------CCGG- -5'
26477 3' -59.7 NC_005357.1 + 4571 0.69 0.25045
Target:  5'- cGCCgagGCGCUGCUcGguGCGCCaGGCg -3'
miRNA:   3'- uCGGa--UGCGGCGGaUguUGCGG-CCGg -5'
26477 3' -59.7 NC_005357.1 + 7242 0.69 0.25045
Target:  5'- cGGCCacugGCGCgGgCCgauguCGCCGGCCu -3'
miRNA:   3'- -UCGGa---UGCGgC-GGauguuGCGGCCGG- -5'
26477 3' -59.7 NC_005357.1 + 34750 0.69 0.253021
Target:  5'- cGGCCgcagauCGCCGCCaaagaacggcgcgugUACGGCaaggaGCCGGCg -3'
miRNA:   3'- -UCGGau----GCGGCGG---------------AUGUUG-----CGGCCGg -5'
26477 3' -59.7 NC_005357.1 + 14143 0.69 0.263523
Target:  5'- aAGuUCUGCGCCGUgUccCAGCGCgCGGUCa -3'
miRNA:   3'- -UC-GGAUGCGGCGgAu-GUUGCG-GCCGG- -5'
26477 3' -59.7 NC_005357.1 + 32090 0.69 0.263523
Target:  5'- aGGCacACGCCGCagcgACGGCuaCGGCCu -3'
miRNA:   3'- -UCGgaUGCGGCGga--UGUUGcgGCCGG- -5'
26477 3' -59.7 NC_005357.1 + 4177 0.69 0.270264
Target:  5'- uAGCCg--GCCGCCUcgaugGCGggcAUGuuGGCCg -3'
miRNA:   3'- -UCGGaugCGGCGGA-----UGU---UGCggCCGG- -5'
26477 3' -59.7 NC_005357.1 + 8463 0.69 0.270264
Target:  5'- cGUCgAgGUgGCCUGCGAUGCCGcaGCCg -3'
miRNA:   3'- uCGGaUgCGgCGGAUGUUGCGGC--CGG- -5'
26477 3' -59.7 NC_005357.1 + 8287 0.69 0.270264
Target:  5'- gGGCC-ACGCUGCCgggGCAGUGCa-GCCa -3'
miRNA:   3'- -UCGGaUGCGGCGGa--UGUUGCGgcCGG- -5'
26477 3' -59.7 NC_005357.1 + 8960 0.69 0.25045
Target:  5'- uGGCCgugcCGCgauaGCCaGCGugGCCGuGCCg -3'
miRNA:   3'- -UCGGau--GCGg---CGGaUGUugCGGC-CGG- -5'
26477 3' -59.7 NC_005357.1 + 33830 0.69 0.284163
Target:  5'- cGCCUACGCCaucCCcACGGuCGCCGuGaCCg -3'
miRNA:   3'- uCGGAUGCGGc--GGaUGUU-GCGGC-C-GG- -5'
26477 3' -59.7 NC_005357.1 + 33786 0.69 0.273
Target:  5'- gAGUacgGCGCgGCCUGgGGCGuuuccgaagggcguaCCGGCCa -3'
miRNA:   3'- -UCGga-UGCGgCGGAUgUUGC---------------GGCCGG- -5'
26477 3' -59.7 NC_005357.1 + 10457 0.69 0.277144
Target:  5'- cGCCcuugGCGUCGCCcuggaagucgcGCAGCaCCGGCCc -3'
miRNA:   3'- uCGGa---UGCGGCGGa----------UGUUGcGGCCGG- -5'
26477 3' -59.7 NC_005357.1 + 35244 0.69 0.277144
Target:  5'- aAGCCcaGCGUCGCCcccgaauccgACaAGCGCCcGGCCc -3'
miRNA:   3'- -UCGGa-UGCGGCGGa---------UG-UUGCGG-CCGG- -5'
26477 3' -59.7 NC_005357.1 + 12882 0.69 0.282042
Target:  5'- gAGCCacaggcucgugguguCGUCGCCUuugGCGauGCGCuCGGCCg -3'
miRNA:   3'- -UCGGau-------------GCGGCGGA---UGU--UGCG-GCCGG- -5'
26477 3' -59.7 NC_005357.1 + 1096 0.69 0.284163
Target:  5'- uGCCUugGCCGUgUcgcgcgGCAugucGCGCauCGGCCc -3'
miRNA:   3'- uCGGAugCGGCGgA------UGU----UGCG--GCCGG- -5'
26477 3' -59.7 NC_005357.1 + 4254 0.69 0.284163
Target:  5'- uAGUCggUGCCgGCCguCAGCGCCGGCa -3'
miRNA:   3'- -UCGGauGCGG-CGGauGUUGCGGCCGg -5'
26477 3' -59.7 NC_005357.1 + 38334 0.69 0.284163
Target:  5'- -uUCaGCGCCGCCcACcugGCCGGCCu -3'
miRNA:   3'- ucGGaUGCGGCGGaUGuugCGGCCGG- -5'
26477 3' -59.7 NC_005357.1 + 5502 0.69 0.284163
Target:  5'- cGGCg-AUGCUGCCaaagucguaggAC-ACGCCGGCCg -3'
miRNA:   3'- -UCGgaUGCGGCGGa----------UGuUGCGGCCGG- -5'
26477 3' -59.7 NC_005357.1 + 13884 0.69 0.266203
Target:  5'- uGGCCgGCgGCCGCaaggUcgugccguucaacaaGCAGCGCCGGCa -3'
miRNA:   3'- -UCGGaUG-CGGCGg---A---------------UGUUGCGGCCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.