miRNA display CGI


Results 61 - 80 of 266 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26477 3' -59.7 NC_005357.1 + 25485 0.72 0.168783
Target:  5'- cGGCggcACGCUGCUggACGGCGCCGuGCCc -3'
miRNA:   3'- -UCGga-UGCGGCGGa-UGUUGCGGC-CGG- -5'
26477 3' -59.7 NC_005357.1 + 38057 0.72 0.17339
Target:  5'- cGCCUggcuGCGCaucCGCCUGC--CGuCCGGCCg -3'
miRNA:   3'- uCGGA----UGCG---GCGGAUGuuGC-GGCCGG- -5'
26477 3' -59.7 NC_005357.1 + 28524 0.72 0.17339
Target:  5'- uGCCgGCGCUGCUUguugaacggcACGAccuugcggcCGCCGGCCa -3'
miRNA:   3'- uCGGaUGCGGCGGA----------UGUU---------GCGGCCGG- -5'
26477 3' -59.7 NC_005357.1 + 7706 0.72 0.17339
Target:  5'- cGGCCggcuUGCCGaugaaCUGCAGCGCacgcucggCGGCCg -3'
miRNA:   3'- -UCGGau--GCGGCg----GAUGUUGCG--------GCCGG- -5'
26477 3' -59.7 NC_005357.1 + 4386 0.72 0.17339
Target:  5'- cAGCCagGCGCCGUC----GCGCCgGGCCu -3'
miRNA:   3'- -UCGGa-UGCGGCGGauguUGCGG-CCGG- -5'
26477 3' -59.7 NC_005357.1 + 11792 0.72 0.178109
Target:  5'- uGGUCUGCGCC-CUcAUucGCGCCGGCUg -3'
miRNA:   3'- -UCGGAUGCGGcGGaUGu-UGCGGCCGG- -5'
26477 3' -59.7 NC_005357.1 + 37149 0.72 0.178109
Target:  5'- uGGCCgacaACGCCGCgaACAucaacACGgUGGCCg -3'
miRNA:   3'- -UCGGa---UGCGGCGgaUGU-----UGCgGCCGG- -5'
26477 3' -59.7 NC_005357.1 + 11492 0.71 0.182453
Target:  5'- cGCCUGCGacaCCGCaaaggGCAGCGCCugcgcuggcgugaGGCCc -3'
miRNA:   3'- uCGGAUGC---GGCGga---UGUUGCGG-------------CCGG- -5'
26477 3' -59.7 NC_005357.1 + 13141 0.71 0.182941
Target:  5'- gGGCCagcaguuCGUCGCCUACcACGuccaccccgacaCCGGCCg -3'
miRNA:   3'- -UCGGau-----GCGGCGGAUGuUGC------------GGCCGG- -5'
26477 3' -59.7 NC_005357.1 + 5353 0.71 0.182941
Target:  5'- cGCgCUGCgugGCCGCCUGCAccGCGCCcagGGUUa -3'
miRNA:   3'- uCG-GAUG---CGGCGGAUGU--UGCGG---CCGG- -5'
26477 3' -59.7 NC_005357.1 + 37640 0.71 0.182941
Target:  5'- uGGCCUACGCCaaaGCCUucGCggUGUC-GCCu -3'
miRNA:   3'- -UCGGAUGCGG---CGGA--UGuuGCGGcCGG- -5'
26477 3' -59.7 NC_005357.1 + 17368 0.71 0.182941
Target:  5'- cGCCUGCGacagguaUGCCUGCAucGCGCCGacGCa -3'
miRNA:   3'- uCGGAUGCg------GCGGAUGU--UGCGGC--CGg -5'
26477 3' -59.7 NC_005357.1 + 11857 0.71 0.187889
Target:  5'- cAGCCcACcaucuGCCGCauCUACAGCgGCCGGCa -3'
miRNA:   3'- -UCGGaUG-----CGGCG--GAUGUUG-CGGCCGg -5'
26477 3' -59.7 NC_005357.1 + 30444 0.71 0.187889
Target:  5'- gGGCCU-CGCCcugaaucaguuGCCagGgGGCGCCGGUCa -3'
miRNA:   3'- -UCGGAuGCGG-----------CGGa-UgUUGCGGCCGG- -5'
26477 3' -59.7 NC_005357.1 + 20759 0.71 0.187889
Target:  5'- aGGCgCUGCGCCGCgCUcgACucauCGCgCGGCUg -3'
miRNA:   3'- -UCG-GAUGCGGCG-GA--UGuu--GCG-GCCGG- -5'
26477 3' -59.7 NC_005357.1 + 813 0.71 0.187889
Target:  5'- cGCC-GCGCCcaGCCcuUGCcgAACGUCGGCCa -3'
miRNA:   3'- uCGGaUGCGG--CGG--AUG--UUGCGGCCGG- -5'
26477 3' -59.7 NC_005357.1 + 18866 0.71 0.187889
Target:  5'- cGCCcGCaCCuGCCgGCGAUGUCGGCCg -3'
miRNA:   3'- uCGGaUGcGG-CGGaUGUUGCGGCCGG- -5'
26477 3' -59.7 NC_005357.1 + 12201 0.71 0.189901
Target:  5'- cGGCCcGCGCUGCCUgccccuggucgggacGCAGCacaCCGGCa -3'
miRNA:   3'- -UCGGaUGCGGCGGA---------------UGUUGc--GGCCGg -5'
26477 3' -59.7 NC_005357.1 + 33914 0.71 0.191423
Target:  5'- cGCCUACGCCacgGCCcaccgcaucUGCAuuucuucauuacucGCGUCGGCUg -3'
miRNA:   3'- uCGGAUGCGG---CGG---------AUGU--------------UGCGGCCGG- -5'
26477 3' -59.7 NC_005357.1 + 32118 0.71 0.191423
Target:  5'- uGGCCgcUGCCGaCCU-CGACGCCcccgaaucccucaaGGCCg -3'
miRNA:   3'- -UCGGauGCGGC-GGAuGUUGCGG--------------CCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.