Results 81 - 100 of 266 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26477 | 3' | -59.7 | NC_005357.1 | + | 38056 | 0.71 | 0.192955 |
Target: 5'- aAGUCggcCGUCGCCUucacgcgcaccgGCAACGCaaCGGCCa -3' miRNA: 3'- -UCGGau-GCGGCGGA------------UGUUGCG--GCCGG- -5' |
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26477 | 3' | -59.7 | NC_005357.1 | + | 26158 | 0.71 | 0.192955 |
Target: 5'- cGGCU--CGCCGUCUGCGAUG-CGGUCg -3' miRNA: 3'- -UCGGauGCGGCGGAUGUUGCgGCCGG- -5' |
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26477 | 3' | -59.7 | NC_005357.1 | + | 19329 | 0.71 | 0.192955 |
Target: 5'- cGCCguggGCGCCGCCguuGGCGUCGGg- -3' miRNA: 3'- uCGGa---UGCGGCGGaugUUGCGGCCgg -5' |
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26477 | 3' | -59.7 | NC_005357.1 | + | 32541 | 0.71 | 0.19814 |
Target: 5'- cGGCCaggAUGCUGCCgccgGCGAUGCCGcuCCg -3' miRNA: 3'- -UCGGa--UGCGGCGGa---UGUUGCGGCc-GG- -5' |
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26477 | 3' | -59.7 | NC_005357.1 | + | 6231 | 0.71 | 0.19814 |
Target: 5'- uGCCUucgGCCaggGCCUGC-ACGCCGGUa -3' miRNA: 3'- uCGGAug-CGG---CGGAUGuUGCGGCCGg -5' |
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26477 | 3' | -59.7 | NC_005357.1 | + | 32358 | 0.71 | 0.19814 |
Target: 5'- cGCUgcgguCGCCGCCga-GGCcCCGGCCg -3' miRNA: 3'- uCGGau---GCGGCGGaugUUGcGGCCGG- -5' |
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26477 | 3' | -59.7 | NC_005357.1 | + | 39681 | 0.71 | 0.203445 |
Target: 5'- uGGUCggcACGCC-CgaGCAGCGCCgGGCCg -3' miRNA: 3'- -UCGGa--UGCGGcGgaUGUUGCGG-CCGG- -5' |
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26477 | 3' | -59.7 | NC_005357.1 | + | 13053 | 0.71 | 0.203445 |
Target: 5'- uGCUugagUGCgGCCGUCUGCAuguugaauugGCGCuCGGCCu -3' miRNA: 3'- uCGG----AUG-CGGCGGAUGU----------UGCG-GCCGG- -5' |
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26477 | 3' | -59.7 | NC_005357.1 | + | 40662 | 0.71 | 0.208874 |
Target: 5'- cGGCCcgACG-CGCCagGCGcAgGCCGGCCa -3' miRNA: 3'- -UCGGa-UGCgGCGGa-UGU-UgCGGCCGG- -5' |
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26477 | 3' | -59.7 | NC_005357.1 | + | 36228 | 0.71 | 0.208874 |
Target: 5'- gAGCCgcGCGCCGUcaccugcaaacgCUGCGGCaagaCCGGCCu -3' miRNA: 3'- -UCGGa-UGCGGCG------------GAUGUUGc---GGCCGG- -5' |
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26477 | 3' | -59.7 | NC_005357.1 | + | 19999 | 0.71 | 0.208874 |
Target: 5'- gAGUC--CGCCGCCgucaagGCGugGCUGGCg -3' miRNA: 3'- -UCGGauGCGGCGGa-----UGUugCGGCCGg -5' |
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26477 | 3' | -59.7 | NC_005357.1 | + | 31021 | 0.7 | 0.214427 |
Target: 5'- gGGCUUGC-CgGCCgagGCAaucGCGCgGGCCa -3' miRNA: 3'- -UCGGAUGcGgCGGa--UGU---UGCGgCCGG- -5' |
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26477 | 3' | -59.7 | NC_005357.1 | + | 18263 | 0.7 | 0.214427 |
Target: 5'- cGaCCUGCGCCGagaACu-UGCCGGCCg -3' miRNA: 3'- uC-GGAUGCGGCggaUGuuGCGGCCGG- -5' |
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26477 | 3' | -59.7 | NC_005357.1 | + | 25529 | 0.7 | 0.214427 |
Target: 5'- cGGUUUugcCGCCGCCgGCAGCGCCcccguaGCCg -3' miRNA: 3'- -UCGGAu--GCGGCGGaUGUUGCGGc-----CGG- -5' |
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26477 | 3' | -59.7 | NC_005357.1 | + | 27700 | 0.7 | 0.214427 |
Target: 5'- aGGCCgcGCGCCGgCaGCGGCucgccGCCGGUCa -3' miRNA: 3'- -UCGGa-UGCGGCgGaUGUUG-----CGGCCGG- -5' |
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26477 | 3' | -59.7 | NC_005357.1 | + | 41923 | 0.7 | 0.214427 |
Target: 5'- cGCCUGCaaGCCGCC-GCGGCGCaguaugcuGCCg -3' miRNA: 3'- uCGGAUG--CGGCGGaUGUUGCGgc------CGG- -5' |
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26477 | 3' | -59.7 | NC_005357.1 | + | 8180 | 0.7 | 0.220106 |
Target: 5'- cGCCcggAUGCUGCCgGCGauuucaucGCGCaCGGCCu -3' miRNA: 3'- uCGGa--UGCGGCGGaUGU--------UGCG-GCCGG- -5' |
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26477 | 3' | -59.7 | NC_005357.1 | + | 15429 | 0.7 | 0.224158 |
Target: 5'- -uCC-GCGCCGCUguagccccaguucuUGCAGCGUCGGUCg -3' miRNA: 3'- ucGGaUGCGGCGG--------------AUGUUGCGGCCGG- -5' |
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26477 | 3' | -59.7 | NC_005357.1 | + | 4117 | 0.7 | 0.225913 |
Target: 5'- cAGCCUGCGCUGCagcguUGCuuC-CCGGCg -3' miRNA: 3'- -UCGGAUGCGGCGg----AUGuuGcGGCCGg -5' |
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26477 | 3' | -59.7 | NC_005357.1 | + | 18584 | 0.7 | 0.225913 |
Target: 5'- gGGUUU-CGCCuGCCUGCuggucACGCCGGUg -3' miRNA: 3'- -UCGGAuGCGG-CGGAUGu----UGCGGCCGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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