miRNA display CGI


Results 101 - 120 of 266 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26477 3' -59.7 NC_005357.1 + 8830 0.7 0.23185
Target:  5'- gGGUCgg-GCCaGCC-GCAACGCgGGCCa -3'
miRNA:   3'- -UCGGaugCGG-CGGaUGUUGCGgCCGG- -5'
26477 3' -59.7 NC_005357.1 + 1179 0.7 0.23185
Target:  5'- uAGUCU-CGCCGCCg---GgGUCGGCCg -3'
miRNA:   3'- -UCGGAuGCGGCGGauguUgCGGCCGG- -5'
26477 3' -59.7 NC_005357.1 + 22652 0.7 0.236693
Target:  5'- cGGCCUGgcaaucagugaaGaCCGCCU-CGugGCCGGCa -3'
miRNA:   3'- -UCGGAUg-----------C-GGCGGAuGUugCGGCCGg -5'
26477 3' -59.7 NC_005357.1 + 14531 0.7 0.237917
Target:  5'- cAGCC-ACGUCGCCg---GCGCCGGaCa -3'
miRNA:   3'- -UCGGaUGCGGCGGauguUGCGGCCgG- -5'
26477 3' -59.7 NC_005357.1 + 32307 0.7 0.237917
Target:  5'- cGaCCUcauCGCCGCCauCAAgGCCGGCg -3'
miRNA:   3'- uC-GGAu--GCGGCGGauGUUgCGGCCGg -5'
26477 3' -59.7 NC_005357.1 + 18905 0.7 0.237917
Target:  5'- cGCgUGCGCCGCCUGgAaggcGCGCUcGCg -3'
miRNA:   3'- uCGgAUGCGGCGGAUgU----UGCGGcCGg -5'
26477 3' -59.7 NC_005357.1 + 8679 0.7 0.237917
Target:  5'- cGGCugCUGCGCCGCCcagguguGCGCCGcGCa -3'
miRNA:   3'- -UCG--GAUGCGGCGGaugu---UGCGGC-CGg -5'
26477 3' -59.7 NC_005357.1 + 38387 0.7 0.237917
Target:  5'- uGGCCUGcCGCuCGCC-GCG--GCCGGCUu -3'
miRNA:   3'- -UCGGAU-GCG-GCGGaUGUugCGGCCGG- -5'
26477 3' -59.7 NC_005357.1 + 34993 0.69 0.25045
Target:  5'- aGGCCgaaGCCGaaCUGCug-GCCGGCCa -3'
miRNA:   3'- -UCGGaugCGGCg-GAUGuugCGGCCGG- -5'
26477 3' -59.7 NC_005357.1 + 8960 0.69 0.25045
Target:  5'- uGGCCgugcCGCgauaGCCaGCGugGCCGuGCCg -3'
miRNA:   3'- -UCGGau--GCGg---CGGaUGUugCGGC-CGG- -5'
26477 3' -59.7 NC_005357.1 + 4571 0.69 0.25045
Target:  5'- cGCCgagGCGCUGCUcGguGCGCCaGGCg -3'
miRNA:   3'- uCGGa--UGCGGCGGaUguUGCGG-CCGg -5'
26477 3' -59.7 NC_005357.1 + 7242 0.69 0.25045
Target:  5'- cGGCCacugGCGCgGgCCgauguCGCCGGCCu -3'
miRNA:   3'- -UCGGa---UGCGgC-GGauguuGCGGCCGG- -5'
26477 3' -59.7 NC_005357.1 + 28342 0.69 0.25045
Target:  5'- uGGCCUugGCCucGUCggGCAGCGCgCGGa- -3'
miRNA:   3'- -UCGGAugCGG--CGGa-UGUUGCG-GCCgg -5'
26477 3' -59.7 NC_005357.1 + 25824 0.69 0.25045
Target:  5'- uGCaCcGgGCCGCCguuGGCGCCGGUCa -3'
miRNA:   3'- uCG-GaUgCGGCGGaugUUGCGGCCGG- -5'
26477 3' -59.7 NC_005357.1 + 24551 0.69 0.25045
Target:  5'- uGGUCgcgcaGCGCgGCgaugGCGAgGCCGGCCa -3'
miRNA:   3'- -UCGGa----UGCGgCGga--UGUUgCGGCCGG- -5'
26477 3' -59.7 NC_005357.1 + 34750 0.69 0.253021
Target:  5'- cGGCCgcagauCGCCGCCaaagaacggcgcgugUACGGCaaggaGCCGGCg -3'
miRNA:   3'- -UCGGau----GCGGCGG---------------AUGUUG-----CGGCCGg -5'
26477 3' -59.7 NC_005357.1 + 36047 0.69 0.256918
Target:  5'- cGCCgcgGCgGCCGaCCUGguguaaccCAGCGCCccGGCCu -3'
miRNA:   3'- uCGGa--UG-CGGC-GGAU--------GUUGCGG--CCGG- -5'
26477 3' -59.7 NC_005357.1 + 980 0.69 0.263523
Target:  5'- cAGCCacUugGCCGCCUgGCggUGCCguGGUUc -3'
miRNA:   3'- -UCGG--AugCGGCGGA-UGuuGCGG--CCGG- -5'
26477 3' -59.7 NC_005357.1 + 33870 0.69 0.263523
Target:  5'- cGCCUGuCGCUGCCcgccauCGGCGC-GGCUg -3'
miRNA:   3'- uCGGAU-GCGGCGGau----GUUGCGgCCGG- -5'
26477 3' -59.7 NC_005357.1 + 26241 0.69 0.263523
Target:  5'- uGCgcGCGUCGCCgaagGCAcgggcaccCGCCGGCCu -3'
miRNA:   3'- uCGgaUGCGGCGGa---UGUu-------GCGGCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.