miRNA display CGI


Results 141 - 160 of 266 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26477 3' -59.7 NC_005357.1 + 35584 0.69 0.283455
Target:  5'- gGGCCUAcgaaaaggcCGUCGCCgaggGCAACGacgaaacCCGcGCCg -3'
miRNA:   3'- -UCGGAU---------GCGGCGGa---UGUUGC-------GGC-CGG- -5'
26477 3' -59.7 NC_005357.1 + 5502 0.69 0.284163
Target:  5'- cGGCg-AUGCUGCCaaagucguaggAC-ACGCCGGCCg -3'
miRNA:   3'- -UCGgaUGCGGCGGa----------UGuUGCGGCCGG- -5'
26477 3' -59.7 NC_005357.1 + 38334 0.69 0.284163
Target:  5'- -uUCaGCGCCGCCcACcugGCCGGCCu -3'
miRNA:   3'- ucGGaUGCGGCGGaUGuugCGGCCGG- -5'
26477 3' -59.7 NC_005357.1 + 1096 0.69 0.284163
Target:  5'- uGCCUugGCCGUgUcgcgcgGCAugucGCGCauCGGCCc -3'
miRNA:   3'- uCGGAugCGGCGgA------UGU----UGCG--GCCGG- -5'
26477 3' -59.7 NC_005357.1 + 4254 0.69 0.284163
Target:  5'- uAGUCggUGCCgGCCguCAGCGCCGGCa -3'
miRNA:   3'- -UCGGauGCGG-CGGauGUUGCGGCCGg -5'
26477 3' -59.7 NC_005357.1 + 37539 0.69 0.284163
Target:  5'- uGGCCgaaaacgAgGCCGCCgucGCcGCGCUGGgCa -3'
miRNA:   3'- -UCGGa------UgCGGCGGa--UGuUGCGGCCgG- -5'
26477 3' -59.7 NC_005357.1 + 33830 0.69 0.284163
Target:  5'- cGCCUACGCCaucCCcACGGuCGCCGuGaCCg -3'
miRNA:   3'- uCGGAUGCGGc--GGaUGUU-GCGGC-C-GG- -5'
26477 3' -59.7 NC_005357.1 + 40446 0.68 0.291321
Target:  5'- cGaCCU-CGCgCGCCUACAGCguGCCuucccccagGGCCg -3'
miRNA:   3'- uC-GGAuGCG-GCGGAUGUUG--CGG---------CCGG- -5'
26477 3' -59.7 NC_005357.1 + 23353 0.68 0.291321
Target:  5'- cGGCCU-CGCCGCCgaugaAC-ACGgUGGCg -3'
miRNA:   3'- -UCGGAuGCGGCGGa----UGuUGCgGCCGg -5'
26477 3' -59.7 NC_005357.1 + 25620 0.68 0.291321
Target:  5'- --aCUGCGCCGCCUgggcGCGACcaaCUGGCa -3'
miRNA:   3'- ucgGAUGCGGCGGA----UGUUGc--GGCCGg -5'
26477 3' -59.7 NC_005357.1 + 7030 0.68 0.291321
Target:  5'- cGUUUGUGCCGCCUguuGCAgcagGCGCaUGGCCu -3'
miRNA:   3'- uCGGAUGCGGCGGA---UGU----UGCG-GCCGG- -5'
26477 3' -59.7 NC_005357.1 + 9168 0.68 0.292045
Target:  5'- gGGCCggcagcgacaacuugGCGCCGUC---GACGuuGGCCu -3'
miRNA:   3'- -UCGGa--------------UGCGGCGGaugUUGCggCCGG- -5'
26477 3' -59.7 NC_005357.1 + 33405 0.68 0.295684
Target:  5'- cGUCUggugacgaacugguGCGCCGCCUGCuggaAGCGCCcccgcgcGGCg -3'
miRNA:   3'- uCGGA--------------UGCGGCGGAUG----UUGCGG-------CCGg -5'
26477 3' -59.7 NC_005357.1 + 30122 0.68 0.296416
Target:  5'- aGGCC-GCGCCagaacacgccgccgGCCUGCAccGCGUCGGaCa -3'
miRNA:   3'- -UCGGaUGCGG--------------CGGAUGU--UGCGGCCgG- -5'
26477 3' -59.7 NC_005357.1 + 13755 0.68 0.29862
Target:  5'- uGGC--GCGCCGCgCUgGCGAggcCGCCGGCa -3'
miRNA:   3'- -UCGgaUGCGGCG-GA-UGUU---GCGGCCGg -5'
26477 3' -59.7 NC_005357.1 + 13432 0.68 0.29862
Target:  5'- cGCCUACGUCGauaacgaggaCUACGACaCCuGGCUg -3'
miRNA:   3'- uCGGAUGCGGCg---------GAUGUUGcGG-CCGG- -5'
26477 3' -59.7 NC_005357.1 + 20613 0.68 0.29862
Target:  5'- gAGCaaccCGCCG-CUGCAACuGCCGGUg -3'
miRNA:   3'- -UCGgau-GCGGCgGAUGUUG-CGGCCGg -5'
26477 3' -59.7 NC_005357.1 + 10072 0.68 0.29862
Target:  5'- gGGCCUcggcgGCGaCCGCagcgaccuggGCGgcgguugucgggACGCCGGCCu -3'
miRNA:   3'- -UCGGA-----UGC-GGCGga--------UGU------------UGCGGCCGG- -5'
26477 3' -59.7 NC_005357.1 + 33895 0.68 0.29862
Target:  5'- cGGCCUGCGauaCCUggGCAAguuCGCCGGCg -3'
miRNA:   3'- -UCGGAUGCggcGGA--UGUU---GCGGCCGg -5'
26477 3' -59.7 NC_005357.1 + 34002 0.68 0.29862
Target:  5'- aAGCCUcaAgGCCGUagACaAGCGCaCGGCCc -3'
miRNA:   3'- -UCGGA--UgCGGCGgaUG-UUGCG-GCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.