miRNA display CGI


Results 101 - 120 of 266 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26477 3' -59.7 NC_005357.1 + 40707 0.68 0.30606
Target:  5'- aGGaCUUggACGCCcucGCCgGC-ACGCCGGCCc -3'
miRNA:   3'- -UC-GGA--UGCGG---CGGaUGuUGCGGCCGG- -5'
26477 3' -59.7 NC_005357.1 + 26378 0.68 0.30606
Target:  5'- cGGCCacgUGCGCgaacugGCCUACAACugGCaGGCCa -3'
miRNA:   3'- -UCGG---AUGCGg-----CGGAUGUUG--CGgCCGG- -5'
26477 3' -59.7 NC_005357.1 + 33110 0.68 0.30606
Target:  5'- cGCC-GCGCCGaCgUGCGcCGCCaGGUCg -3'
miRNA:   3'- uCGGaUGCGGC-GgAUGUuGCGG-CCGG- -5'
26477 3' -59.7 NC_005357.1 + 34201 0.68 0.30606
Target:  5'- aAGCUgcugACgGCCGCCgacCAGCGCgacuacgaGGCCg -3'
miRNA:   3'- -UCGGa---UG-CGGCGGau-GUUGCGg-------CCGG- -5'
26477 3' -59.7 NC_005357.1 + 1766 0.68 0.30606
Target:  5'- cGGCCUGCGCCug--GC-GCGUCgGGCCg -3'
miRNA:   3'- -UCGGAUGCGGcggaUGuUGCGG-CCGG- -5'
26477 3' -59.7 NC_005357.1 + 6618 0.68 0.30606
Target:  5'- uGGCgUAgucCGCCGCCaGCuucgcGCGCUuGGCCg -3'
miRNA:   3'- -UCGgAU---GCGGCGGaUGu----UGCGG-CCGG- -5'
26477 3' -59.7 NC_005357.1 + 20613 0.68 0.29862
Target:  5'- gAGCaaccCGCCG-CUGCAACuGCCGGUg -3'
miRNA:   3'- -UCGgau-GCGGCgGAUGUUG-CGGCCGg -5'
26477 3' -59.7 NC_005357.1 + 10072 0.68 0.29862
Target:  5'- gGGCCUcggcgGCGaCCGCagcgaccuggGCGgcgguugucgggACGCCGGCCu -3'
miRNA:   3'- -UCGGA-----UGC-GGCGga--------UGU------------UGCGGCCGG- -5'
26477 3' -59.7 NC_005357.1 + 34002 0.68 0.29862
Target:  5'- aAGCCUcaAgGCCGUagACaAGCGCaCGGCCc -3'
miRNA:   3'- -UCGGA--UgCGGCGgaUG-UUGCG-GCCGG- -5'
26477 3' -59.7 NC_005357.1 + 13755 0.68 0.29862
Target:  5'- uGGC--GCGCCGCgCUgGCGAggcCGCCGGCa -3'
miRNA:   3'- -UCGgaUGCGGCG-GA-UGUU---GCGGCCGg -5'
26477 3' -59.7 NC_005357.1 + 13432 0.68 0.29862
Target:  5'- cGCCUACGUCGauaacgaggaCUACGACaCCuGGCUg -3'
miRNA:   3'- uCGGAUGCGGCg---------GAUGUUGcGG-CCGG- -5'
26477 3' -59.7 NC_005357.1 + 33895 0.68 0.29862
Target:  5'- cGGCCUGCGauaCCUggGCAAguuCGCCGGCg -3'
miRNA:   3'- -UCGGAUGCggcGGA--UGUU---GCGGCCGg -5'
26477 3' -59.7 NC_005357.1 + 30122 0.68 0.296416
Target:  5'- aGGCC-GCGCCagaacacgccgccgGCCUGCAccGCGUCGGaCa -3'
miRNA:   3'- -UCGGaUGCGG--------------CGGAUGU--UGCGGCCgG- -5'
26477 3' -59.7 NC_005357.1 + 33405 0.68 0.295684
Target:  5'- cGUCUggugacgaacugguGCGCCGCCUGCuggaAGCGCCcccgcgcGGCg -3'
miRNA:   3'- uCGGA--------------UGCGGCGGAUG----UUGCGG-------CCGg -5'
26477 3' -59.7 NC_005357.1 + 9168 0.68 0.292045
Target:  5'- gGGCCggcagcgacaacuugGCGCCGUC---GACGuuGGCCu -3'
miRNA:   3'- -UCGGa--------------UGCGGCGGaugUUGCggCCGG- -5'
26477 3' -59.7 NC_005357.1 + 25620 0.68 0.291321
Target:  5'- --aCUGCGCCGCCUgggcGCGACcaaCUGGCa -3'
miRNA:   3'- ucgGAUGCGGCGGA----UGUUGc--GGCCGg -5'
26477 3' -59.7 NC_005357.1 + 40446 0.68 0.291321
Target:  5'- cGaCCU-CGCgCGCCUACAGCguGCCuucccccagGGCCg -3'
miRNA:   3'- uC-GGAuGCG-GCGGAUGUUG--CGG---------CCGG- -5'
26477 3' -59.7 NC_005357.1 + 23353 0.68 0.291321
Target:  5'- cGGCCU-CGCCGCCgaugaAC-ACGgUGGCg -3'
miRNA:   3'- -UCGGAuGCGGCGGa----UGuUGCgGCCGg -5'
26477 3' -59.7 NC_005357.1 + 7030 0.68 0.291321
Target:  5'- cGUUUGUGCCGCCUguuGCAgcagGCGCaUGGCCu -3'
miRNA:   3'- uCGGAUGCGGCGGA---UGU----UGCG-GCCGG- -5'
26477 3' -59.7 NC_005357.1 + 33830 0.69 0.284163
Target:  5'- cGCCUACGCCaucCCcACGGuCGCCGuGaCCg -3'
miRNA:   3'- uCGGAUGCGGc--GGaUGUU-GCGGC-C-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.