Results 121 - 140 of 266 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
26477 | 3' | -59.7 | NC_005357.1 | + | 5502 | 0.69 | 0.284163 |
Target: 5'- cGGCg-AUGCUGCCaaagucguaggAC-ACGCCGGCCg -3' miRNA: 3'- -UCGgaUGCGGCGGa----------UGuUGCGGCCGG- -5' |
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26477 | 3' | -59.7 | NC_005357.1 | + | 4254 | 0.69 | 0.284163 |
Target: 5'- uAGUCggUGCCgGCCguCAGCGCCGGCa -3' miRNA: 3'- -UCGGauGCGG-CGGauGUUGCGGCCGg -5' |
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26477 | 3' | -59.7 | NC_005357.1 | + | 1096 | 0.69 | 0.284163 |
Target: 5'- uGCCUugGCCGUgUcgcgcgGCAugucGCGCauCGGCCc -3' miRNA: 3'- uCGGAugCGGCGgA------UGU----UGCG--GCCGG- -5' |
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26477 | 3' | -59.7 | NC_005357.1 | + | 37539 | 0.69 | 0.284163 |
Target: 5'- uGGCCgaaaacgAgGCCGCCgucGCcGCGCUGGgCa -3' miRNA: 3'- -UCGGa------UgCGGCGGa--UGuUGCGGCCgG- -5' |
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26477 | 3' | -59.7 | NC_005357.1 | + | 33830 | 0.69 | 0.284163 |
Target: 5'- cGCCUACGCCaucCCcACGGuCGCCGuGaCCg -3' miRNA: 3'- uCGGAUGCGGc--GGaUGUU-GCGGC-C-GG- -5' |
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26477 | 3' | -59.7 | NC_005357.1 | + | 35584 | 0.69 | 0.283455 |
Target: 5'- gGGCCUAcgaaaaggcCGUCGCCgaggGCAACGacgaaacCCGcGCCg -3' miRNA: 3'- -UCGGAU---------GCGGCGGa---UGUUGC-------GGC-CGG- -5' |
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26477 | 3' | -59.7 | NC_005357.1 | + | 12882 | 0.69 | 0.282042 |
Target: 5'- gAGCCacaggcucgugguguCGUCGCCUuugGCGauGCGCuCGGCCg -3' miRNA: 3'- -UCGGau-------------GCGGCGGA---UGU--UGCG-GCCGG- -5' |
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26477 | 3' | -59.7 | NC_005357.1 | + | 41379 | 0.69 | 0.277144 |
Target: 5'- cGCCgguuCGCgGCgacaUGCugcCGCCGGCCg -3' miRNA: 3'- uCGGau--GCGgCGg---AUGuu-GCGGCCGG- -5' |
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26477 | 3' | -59.7 | NC_005357.1 | + | 23043 | 0.69 | 0.277144 |
Target: 5'- -aCCUACGCCGaaguggACAAgGCCcuGGCCg -3' miRNA: 3'- ucGGAUGCGGCgga---UGUUgCGG--CCGG- -5' |
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26477 | 3' | -59.7 | NC_005357.1 | + | 35244 | 0.69 | 0.277144 |
Target: 5'- aAGCCcaGCGUCGCCcccgaauccgACaAGCGCCcGGCCc -3' miRNA: 3'- -UCGGa-UGCGGCGGa---------UG-UUGCGG-CCGG- -5' |
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26477 | 3' | -59.7 | NC_005357.1 | + | 10457 | 0.69 | 0.277144 |
Target: 5'- cGCCcuugGCGUCGCCcuggaagucgcGCAGCaCCGGCCc -3' miRNA: 3'- uCGGa---UGCGGCGGa----------UGUUGcGGCCGG- -5' |
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26477 | 3' | -59.7 | NC_005357.1 | + | 35060 | 0.69 | 0.277144 |
Target: 5'- uGCC--CGCCGCUggacgaACGACGCCgaggucgaGGCCg -3' miRNA: 3'- uCGGauGCGGCGGa-----UGUUGCGG--------CCGG- -5' |
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26477 | 3' | -59.7 | NC_005357.1 | + | 18774 | 0.69 | 0.27645 |
Target: 5'- cGCCUGgugcaguUGCUGCCcGC--CGCCGGCUa -3' miRNA: 3'- uCGGAU-------GCGGCGGaUGuuGCGGCCGG- -5' |
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26477 | 3' | -59.7 | NC_005357.1 | + | 33786 | 0.69 | 0.273 |
Target: 5'- gAGUacgGCGCgGCCUGgGGCGuuuccgaagggcguaCCGGCCa -3' miRNA: 3'- -UCGga-UGCGgCGGAUgUUGC---------------GGCCGG- -5' |
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26477 | 3' | -59.7 | NC_005357.1 | + | 8463 | 0.69 | 0.270264 |
Target: 5'- cGUCgAgGUgGCCUGCGAUGCCGcaGCCg -3' miRNA: 3'- uCGGaUgCGgCGGAUGUUGCGGC--CGG- -5' |
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26477 | 3' | -59.7 | NC_005357.1 | + | 8287 | 0.69 | 0.270264 |
Target: 5'- gGGCC-ACGCUGCCgggGCAGUGCa-GCCa -3' miRNA: 3'- -UCGGaUGCGGCGGa--UGUUGCGgcCGG- -5' |
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26477 | 3' | -59.7 | NC_005357.1 | + | 7343 | 0.69 | 0.270264 |
Target: 5'- uGGCCUugaGCGCgGCCU-CGACcUCGGCg -3' miRNA: 3'- -UCGGA---UGCGgCGGAuGUUGcGGCCGg -5' |
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26477 | 3' | -59.7 | NC_005357.1 | + | 4177 | 0.69 | 0.270264 |
Target: 5'- uAGCCg--GCCGCCUcgaugGCGggcAUGuuGGCCg -3' miRNA: 3'- -UCGGaugCGGCGGA-----UGU---UGCggCCGG- -5' |
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26477 | 3' | -59.7 | NC_005357.1 | + | 14727 | 0.69 | 0.270264 |
Target: 5'- cGGCga--GCCGCUgcCGGCGCgCGGCCu -3' miRNA: 3'- -UCGgaugCGGCGGauGUUGCG-GCCGG- -5' |
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26477 | 3' | -59.7 | NC_005357.1 | + | 28852 | 0.69 | 0.270264 |
Target: 5'- uGCCgaaGCUGUCc-CAGCGCCGcGCCa -3' miRNA: 3'- uCGGaugCGGCGGauGUUGCGGC-CGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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