miRNA display CGI


Results 161 - 180 of 266 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26477 3' -59.7 NC_005357.1 + 18905 0.7 0.237917
Target:  5'- cGCgUGCGCCGCCUGgAaggcGCGCUcGCg -3'
miRNA:   3'- uCGgAUGCGGCGGAUgU----UGCGGcCGg -5'
26477 3' -59.7 NC_005357.1 + 38387 0.7 0.237917
Target:  5'- uGGCCUGcCGCuCGCC-GCG--GCCGGCUu -3'
miRNA:   3'- -UCGGAU-GCG-GCGGaUGUugCGGCCGG- -5'
26477 3' -59.7 NC_005357.1 + 32307 0.7 0.237917
Target:  5'- cGaCCUcauCGCCGCCauCAAgGCCGGCg -3'
miRNA:   3'- uC-GGAu--GCGGCGGauGUUgCGGCCGg -5'
26477 3' -59.7 NC_005357.1 + 22652 0.7 0.236693
Target:  5'- cGGCCUGgcaaucagugaaGaCCGCCU-CGugGCCGGCa -3'
miRNA:   3'- -UCGGAUg-----------C-GGCGGAuGUugCGGCCGg -5'
26477 3' -59.7 NC_005357.1 + 8830 0.7 0.23185
Target:  5'- gGGUCgg-GCCaGCC-GCAACGCgGGCCa -3'
miRNA:   3'- -UCGGaugCGG-CGGaUGUUGCGgCCGG- -5'
26477 3' -59.7 NC_005357.1 + 1179 0.7 0.23185
Target:  5'- uAGUCU-CGCCGCCg---GgGUCGGCCg -3'
miRNA:   3'- -UCGGAuGCGGCGGauguUgCGGCCGG- -5'
26477 3' -59.7 NC_005357.1 + 4117 0.7 0.225913
Target:  5'- cAGCCUGCGCUGCagcguUGCuuC-CCGGCg -3'
miRNA:   3'- -UCGGAUGCGGCGg----AUGuuGcGGCCGg -5'
26477 3' -59.7 NC_005357.1 + 18584 0.7 0.225913
Target:  5'- gGGUUU-CGCCuGCCUGCuggucACGCCGGUg -3'
miRNA:   3'- -UCGGAuGCGG-CGGAUGu----UGCGGCCGg -5'
26477 3' -59.7 NC_005357.1 + 15429 0.7 0.224158
Target:  5'- -uCC-GCGCCGCUguagccccaguucuUGCAGCGUCGGUCg -3'
miRNA:   3'- ucGGaUGCGGCGG--------------AUGUUGCGGCCGG- -5'
26477 3' -59.7 NC_005357.1 + 8180 0.7 0.220106
Target:  5'- cGCCcggAUGCUGCCgGCGauuucaucGCGCaCGGCCu -3'
miRNA:   3'- uCGGa--UGCGGCGGaUGU--------UGCG-GCCGG- -5'
26477 3' -59.7 NC_005357.1 + 31021 0.7 0.214427
Target:  5'- gGGCUUGC-CgGCCgagGCAaucGCGCgGGCCa -3'
miRNA:   3'- -UCGGAUGcGgCGGa--UGU---UGCGgCCGG- -5'
26477 3' -59.7 NC_005357.1 + 41923 0.7 0.214427
Target:  5'- cGCCUGCaaGCCGCC-GCGGCGCaguaugcuGCCg -3'
miRNA:   3'- uCGGAUG--CGGCGGaUGUUGCGgc------CGG- -5'
26477 3' -59.7 NC_005357.1 + 27700 0.7 0.214427
Target:  5'- aGGCCgcGCGCCGgCaGCGGCucgccGCCGGUCa -3'
miRNA:   3'- -UCGGa-UGCGGCgGaUGUUG-----CGGCCGG- -5'
26477 3' -59.7 NC_005357.1 + 18263 0.7 0.214427
Target:  5'- cGaCCUGCGCCGagaACu-UGCCGGCCg -3'
miRNA:   3'- uC-GGAUGCGGCggaUGuuGCGGCCGG- -5'
26477 3' -59.7 NC_005357.1 + 25529 0.7 0.214427
Target:  5'- cGGUUUugcCGCCGCCgGCAGCGCCcccguaGCCg -3'
miRNA:   3'- -UCGGAu--GCGGCGGaUGUUGCGGc-----CGG- -5'
26477 3' -59.7 NC_005357.1 + 36228 0.71 0.208874
Target:  5'- gAGCCgcGCGCCGUcaccugcaaacgCUGCGGCaagaCCGGCCu -3'
miRNA:   3'- -UCGGa-UGCGGCG------------GAUGUUGc---GGCCGG- -5'
26477 3' -59.7 NC_005357.1 + 40662 0.71 0.208874
Target:  5'- cGGCCcgACG-CGCCagGCGcAgGCCGGCCa -3'
miRNA:   3'- -UCGGa-UGCgGCGGa-UGU-UgCGGCCGG- -5'
26477 3' -59.7 NC_005357.1 + 19999 0.71 0.208874
Target:  5'- gAGUC--CGCCGCCgucaagGCGugGCUGGCg -3'
miRNA:   3'- -UCGGauGCGGCGGa-----UGUugCGGCCGg -5'
26477 3' -59.7 NC_005357.1 + 13053 0.71 0.203445
Target:  5'- uGCUugagUGCgGCCGUCUGCAuguugaauugGCGCuCGGCCu -3'
miRNA:   3'- uCGG----AUG-CGGCGGAUGU----------UGCG-GCCGG- -5'
26477 3' -59.7 NC_005357.1 + 39681 0.71 0.203445
Target:  5'- uGGUCggcACGCC-CgaGCAGCGCCgGGCCg -3'
miRNA:   3'- -UCGGa--UGCGGcGgaUGUUGCGG-CCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.