miRNA display CGI


Results 61 - 80 of 266 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26477 3' -59.7 NC_005357.1 + 11146 0.82 0.032624
Target:  5'- cGGCCUGCugcuggGCCGCCUGCGcacguugcguGCGCUGGUCg -3'
miRNA:   3'- -UCGGAUG------CGGCGGAUGU----------UGCGGCCGG- -5'
26477 3' -59.7 NC_005357.1 + 11263 0.75 0.099946
Target:  5'- gGGUUUGCGCUGCggcgCUGgGACGCuCGGCCa -3'
miRNA:   3'- -UCGGAUGCGGCG----GAUgUUGCG-GCCGG- -5'
26477 3' -59.7 NC_005357.1 + 11492 0.71 0.182453
Target:  5'- cGCCUGCGacaCCGCaaaggGCAGCGCCugcgcuggcgugaGGCCc -3'
miRNA:   3'- uCGGAUGC---GGCGga---UGUUGCGG-------------CCGG- -5'
26477 3' -59.7 NC_005357.1 + 11578 0.76 0.089294
Target:  5'- aAGCC-AUGCCGCCcAgGGcCGCCGGCUg -3'
miRNA:   3'- -UCGGaUGCGGCGGaUgUU-GCGGCCGG- -5'
26477 3' -59.7 NC_005357.1 + 11792 0.72 0.178109
Target:  5'- uGGUCUGCGCC-CUcAUucGCGCCGGCUg -3'
miRNA:   3'- -UCGGAUGCGGcGGaUGu-UGCGGCCGG- -5'
26477 3' -59.7 NC_005357.1 + 11857 0.71 0.187889
Target:  5'- cAGCCcACcaucuGCCGCauCUACAGCgGCCGGCa -3'
miRNA:   3'- -UCGGaUG-----CGGCG--GAUGUUG-CGGCCGg -5'
26477 3' -59.7 NC_005357.1 + 11997 0.73 0.147359
Target:  5'- uGGCCUuuuccACGUCgGCCaGCAGCGC-GGCCg -3'
miRNA:   3'- -UCGGA-----UGCGG-CGGaUGUUGCGgCCGG- -5'
26477 3' -59.7 NC_005357.1 + 12201 0.71 0.189901
Target:  5'- cGGCCcGCGCUGCCUgccccuggucgggacGCAGCacaCCGGCa -3'
miRNA:   3'- -UCGGaUGCGGCGGA---------------UGUUGc--GGCCGg -5'
26477 3' -59.7 NC_005357.1 + 12413 0.67 0.337231
Target:  5'- cGGCCUugAUGCCGuCCUugGugGCGCUGucgaugucGCCg -3'
miRNA:   3'- -UCGGA--UGCGGC-GGAugU--UGCGGC--------CGG- -5'
26477 3' -59.7 NC_005357.1 + 12684 0.68 0.321363
Target:  5'- cAGCCgAgGCCGaguuCUACGGCG-UGGCCg -3'
miRNA:   3'- -UCGGaUgCGGCg---GAUGUUGCgGCCGG- -5'
26477 3' -59.7 NC_005357.1 + 12882 0.69 0.282042
Target:  5'- gAGCCacaggcucgugguguCGUCGCCUuugGCGauGCGCuCGGCCg -3'
miRNA:   3'- -UCGGau-------------GCGGCGGA---UGU--UGCG-GCCGG- -5'
26477 3' -59.7 NC_005357.1 + 12921 0.66 0.406263
Target:  5'- cAGCCUGuCGUCGCCauugACGuggacacgaccgACGCggaacUGGCCg -3'
miRNA:   3'- -UCGGAU-GCGGCGGa---UGU------------UGCG-----GCCGG- -5'
26477 3' -59.7 NC_005357.1 + 13021 0.67 0.369789
Target:  5'- gGGCaacGCGCCcaagauucugcugGCCUACcGCGCCGaGUCc -3'
miRNA:   3'- -UCGga-UGCGG-------------CGGAUGuUGCGGC-CGG- -5'
26477 3' -59.7 NC_005357.1 + 13053 0.71 0.203445
Target:  5'- uGCUugagUGCgGCCGUCUGCAuguugaauugGCGCuCGGCCu -3'
miRNA:   3'- uCGG----AUG-CGGCGGAUGU----------UGCG-GCCGG- -5'
26477 3' -59.7 NC_005357.1 + 13134 0.66 0.423915
Target:  5'- aGGCgUGgGUcguucugcaacugCGCCU-CGAUGUCGGCCa -3'
miRNA:   3'- -UCGgAUgCG-------------GCGGAuGUUGCGGCCGG- -5'
26477 3' -59.7 NC_005357.1 + 13141 0.71 0.182941
Target:  5'- gGGCCagcaguuCGUCGCCUACcACGuccaccccgacaCCGGCCg -3'
miRNA:   3'- -UCGGau-----GCGGCGGAUGuUGC------------GGCCGG- -5'
26477 3' -59.7 NC_005357.1 + 13282 0.68 0.313641
Target:  5'- cGUCUuucaGCGCCGaUUGCAgcGCGCCggGGCCg -3'
miRNA:   3'- uCGGA----UGCGGCgGAUGU--UGCGG--CCGG- -5'
26477 3' -59.7 NC_005357.1 + 13380 0.74 0.124936
Target:  5'- uGGCCUACgaGCCGCCgguggguauCGAC-CUGGCCg -3'
miRNA:   3'- -UCGGAUG--CGGCGGau-------GUUGcGGCCGG- -5'
26477 3' -59.7 NC_005357.1 + 13432 0.68 0.29862
Target:  5'- cGCCUACGUCGauaacgaggaCUACGACaCCuGGCUg -3'
miRNA:   3'- uCGGAUGCGGCg---------GAUGUUGcGG-CCGG- -5'
26477 3' -59.7 NC_005357.1 + 13755 0.68 0.29862
Target:  5'- uGGC--GCGCCGCgCUgGCGAggcCGCCGGCa -3'
miRNA:   3'- -UCGgaUGCGGCG-GA-UGUU---GCGGCCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.