miRNA display CGI


Results 81 - 100 of 266 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26477 3' -59.7 NC_005357.1 + 13884 0.69 0.266203
Target:  5'- uGGCCgGCgGCCGCaaggUcgugccguucaacaaGCAGCGCCGGCa -3'
miRNA:   3'- -UCGGaUG-CGGCGg---A---------------UGUUGCGGCCGg -5'
26477 3' -59.7 NC_005357.1 + 14083 0.68 0.321363
Target:  5'- cGC--GCGCUGCCcgACGAgGCCaaGGCCa -3'
miRNA:   3'- uCGgaUGCGGCGGa-UGUUgCGG--CCGG- -5'
26477 3' -59.7 NC_005357.1 + 14143 0.69 0.263523
Target:  5'- aAGuUCUGCGCCGUgUccCAGCGCgCGGUCa -3'
miRNA:   3'- -UC-GGAUGCGGCGgAu-GUUGCG-GCCGG- -5'
26477 3' -59.7 NC_005357.1 + 14228 0.65 0.432436
Target:  5'- uGGCCgaccuggacaagGCGCCGCacCUGCuggGCGUgGGCa -3'
miRNA:   3'- -UCGGa-----------UGCGGCG--GAUGu--UGCGgCCGg -5'
26477 3' -59.7 NC_005357.1 + 14271 0.67 0.337231
Target:  5'- uGGCCUGCugcaccauGCUGUCgGCGAUGC-GGCCc -3'
miRNA:   3'- -UCGGAUG--------CGGCGGaUGUUGCGgCCGG- -5'
26477 3' -59.7 NC_005357.1 + 14531 0.7 0.237917
Target:  5'- cAGCC-ACGUCGCCg---GCGCCGGaCa -3'
miRNA:   3'- -UCGGaUGCGGCGGauguUGCGGCCgG- -5'
26477 3' -59.7 NC_005357.1 + 14727 0.69 0.270264
Target:  5'- cGGCga--GCCGCUgcCGGCGCgCGGCCu -3'
miRNA:   3'- -UCGgaugCGGCGGauGUUGCG-GCCGG- -5'
26477 3' -59.7 NC_005357.1 + 14819 0.66 0.406263
Target:  5'- cGGCg-GCGCUGCCUucgcccagguCGAUGCCguuggcGGCCa -3'
miRNA:   3'- -UCGgaUGCGGCGGAu---------GUUGCGG------CCGG- -5'
26477 3' -59.7 NC_005357.1 + 14841 0.77 0.071143
Target:  5'- cGCCaucugGCGCCGCCUGC--UGCCGGUg -3'
miRNA:   3'- uCGGa----UGCGGCGGAUGuuGCGGCCGg -5'
26477 3' -59.7 NC_005357.1 + 14900 0.74 0.124936
Target:  5'- gGGUCUGCGCgGCgauCUGCuGCugGCCGGCCu -3'
miRNA:   3'- -UCGGAUGCGgCG---GAUGuUG--CGGCCGG- -5'
26477 3' -59.7 NC_005357.1 + 14936 0.67 0.381989
Target:  5'- cGGCCgAgGCCGCCggcauccucgcguggUGCGuggcggcGCGCUGGCa -3'
miRNA:   3'- -UCGGaUgCGGCGG---------------AUGU-------UGCGGCCGg -5'
26477 3' -59.7 NC_005357.1 + 14996 0.78 0.059914
Target:  5'- gGGCCUGCgGCCGCCggGCGcgguGCGCCaGGCg -3'
miRNA:   3'- -UCGGAUG-CGGCGGa-UGU----UGCGG-CCGg -5'
26477 3' -59.7 NC_005357.1 + 15176 0.75 0.094478
Target:  5'- uGCCUcgGCCaagaGCCUGgGGCGCCGGCUg -3'
miRNA:   3'- uCGGAugCGG----CGGAUgUUGCGGCCGG- -5'
26477 3' -59.7 NC_005357.1 + 15429 0.7 0.224158
Target:  5'- -uCC-GCGCCGCUguagccccaguucuUGCAGCGUCGGUCg -3'
miRNA:   3'- ucGGaUGCGGCGG--------------AUGUUGCGGCCGG- -5'
26477 3' -59.7 NC_005357.1 + 15942 0.68 0.329227
Target:  5'- uAGgCUGCGgCGCCUuc-GCGuaGGCCa -3'
miRNA:   3'- -UCgGAUGCgGCGGAuguUGCggCCGG- -5'
26477 3' -59.7 NC_005357.1 + 16289 0.67 0.345377
Target:  5'- gAGCCgcUGCGCCaaaucuGCCgcgACGaacacAUGCCGGCa -3'
miRNA:   3'- -UCGG--AUGCGG------CGGa--UGU-----UGCGGCCGg -5'
26477 3' -59.7 NC_005357.1 + 16694 0.67 0.345377
Target:  5'- cAGCgUGCuGCCGCCggugaggACGACGaCCccGCCg -3'
miRNA:   3'- -UCGgAUG-CGGCGGa------UGUUGC-GGc-CGG- -5'
26477 3' -59.7 NC_005357.1 + 16752 0.67 0.345377
Target:  5'- uGCCgaaaucCGCCGgCUgaugacguacAUGACGCCGGCa -3'
miRNA:   3'- uCGGau----GCGGCgGA----------UGUUGCGGCCGg -5'
26477 3' -59.7 NC_005357.1 + 17057 0.73 0.151435
Target:  5'- gGGCUUcUGgCGCCUGCccgGugGCCGGCUa -3'
miRNA:   3'- -UCGGAuGCgGCGGAUG---UugCGGCCGG- -5'
26477 3' -59.7 NC_005357.1 + 17099 0.74 0.113993
Target:  5'- cGGCCUggacaaucccggcgACGagCGCCggugGCAGgGCCGGCCg -3'
miRNA:   3'- -UCGGA--------------UGCg-GCGGa---UGUUgCGGCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.