miRNA display CGI


Results 101 - 120 of 266 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26477 3' -59.7 NC_005357.1 + 17267 0.68 0.329227
Target:  5'- aAGCCggggauauUGCCGUCcACGAaGCCGGCg -3'
miRNA:   3'- -UCGGau------GCGGCGGaUGUUgCGGCCGg -5'
26477 3' -59.7 NC_005357.1 + 17368 0.71 0.182941
Target:  5'- cGCCUGCGacagguaUGCCUGCAucGCGCCGacGCa -3'
miRNA:   3'- uCGGAUGCg------GCGGAUGU--UGCGGC--CGg -5'
26477 3' -59.7 NC_005357.1 + 17873 0.67 0.337231
Target:  5'- cGGCCUcgccauCGCCGCgCUGCGcgaccACG-CGGUCa -3'
miRNA:   3'- -UCGGAu-----GCGGCG-GAUGU-----UGCgGCCGG- -5'
26477 3' -59.7 NC_005357.1 + 17997 0.67 0.379353
Target:  5'- aGGCCgcGCGCgGCaccgACAAaucggGCCGGCUg -3'
miRNA:   3'- -UCGGa-UGCGgCGga--UGUUg----CGGCCGG- -5'
26477 3' -59.7 NC_005357.1 + 18263 0.7 0.214427
Target:  5'- cGaCCUGCGCCGagaACu-UGCCGGCCg -3'
miRNA:   3'- uC-GGAUGCGGCggaUGuuGCGGCCGG- -5'
26477 3' -59.7 NC_005357.1 + 18276 0.66 0.406263
Target:  5'- cAGCCgucgagGCGCUggGCCagGCGcgcaGCCGGCUg -3'
miRNA:   3'- -UCGGa-----UGCGG--CGGa-UGUug--CGGCCGG- -5'
26477 3' -59.7 NC_005357.1 + 18389 0.68 0.329227
Target:  5'- uGCCgaugGCGCCGgUggcgGCcACGUCGGCg -3'
miRNA:   3'- uCGGa---UGCGGCgGa---UGuUGCGGCCGg -5'
26477 3' -59.7 NC_005357.1 + 18461 0.77 0.077492
Target:  5'- cGGUC-GCGgCGCCgGCGGCGUCGGCCg -3'
miRNA:   3'- -UCGGaUGCgGCGGaUGUUGCGGCCGG- -5'
26477 3' -59.7 NC_005357.1 + 18495 0.67 0.337231
Target:  5'- gGGCgUGCGCCugaccaucacGCCU---AUGCCGGCa -3'
miRNA:   3'- -UCGgAUGCGG----------CGGAuguUGCGGCCGg -5'
26477 3' -59.7 NC_005357.1 + 18584 0.7 0.225913
Target:  5'- gGGUUU-CGCCuGCCUGCuggucACGCCGGUg -3'
miRNA:   3'- -UCGGAuGCGG-CGGAUGu----UGCGGCCGg -5'
26477 3' -59.7 NC_005357.1 + 18661 0.69 0.263523
Target:  5'- uAGCCgcgGCGCaucgGCCcgGUGGCGCCGGCa -3'
miRNA:   3'- -UCGGa--UGCGg---CGGa-UGUUGCGGCCGg -5'
26477 3' -59.7 NC_005357.1 + 18774 0.69 0.27645
Target:  5'- cGCCUGgugcaguUGCUGCCcGC--CGCCGGCUa -3'
miRNA:   3'- uCGGAU-------GCGGCGGaUGuuGCGGCCGG- -5'
26477 3' -59.7 NC_005357.1 + 18866 0.71 0.187889
Target:  5'- cGCCcGCaCCuGCCgGCGAUGUCGGCCg -3'
miRNA:   3'- uCGGaUGcGG-CGGaUGUUGCGGCCGG- -5'
26477 3' -59.7 NC_005357.1 + 18905 0.7 0.237917
Target:  5'- cGCgUGCGCCGCCUGgAaggcGCGCUcGCg -3'
miRNA:   3'- uCGgAUGCGGCGGAUgU----UGCGGcCGg -5'
26477 3' -59.7 NC_005357.1 + 19329 0.71 0.192955
Target:  5'- cGCCguggGCGCCGCCguuGGCGUCGGg- -3'
miRNA:   3'- uCGGa---UGCGGCGGaugUUGCGGCCgg -5'
26477 3' -59.7 NC_005357.1 + 19742 0.67 0.379353
Target:  5'- uGCUUGgGCUGgUUGCcguuguUGCCGGCCa -3'
miRNA:   3'- uCGGAUgCGGCgGAUGuu----GCGGCCGG- -5'
26477 3' -59.7 NC_005357.1 + 19924 0.73 0.143382
Target:  5'- cAGCUUGuCGCCGCCgaACuccuUGUCGGCCg -3'
miRNA:   3'- -UCGGAU-GCGGCGGa-UGuu--GCGGCCGG- -5'
26477 3' -59.7 NC_005357.1 + 19999 0.71 0.208874
Target:  5'- gAGUC--CGCCGCCgucaagGCGugGCUGGCg -3'
miRNA:   3'- -UCGGauGCGGCGGa-----UGUugCGGCCGg -5'
26477 3' -59.7 NC_005357.1 + 20190 0.74 0.11495
Target:  5'- cGCCUuguCGUCGCCcucggucuugGCAGCGCCcgcGGCCg -3'
miRNA:   3'- uCGGAu--GCGGCGGa---------UGUUGCGG---CCGG- -5'
26477 3' -59.7 NC_005357.1 + 20236 0.68 0.313641
Target:  5'- uGGCCUugGgUGCCuUGCuccuGgGUCGGCUg -3'
miRNA:   3'- -UCGGAugCgGCGG-AUGu---UgCGGCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.