miRNA display CGI


Results 121 - 140 of 266 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26477 3' -59.7 NC_005357.1 + 20308 0.67 0.379353
Target:  5'- uGCUcgGCgGCCGgUUGCGAUGCgGGCUg -3'
miRNA:   3'- uCGGa-UG-CGGCgGAUGUUGCGgCCGG- -5'
26477 3' -59.7 NC_005357.1 + 20611 0.67 0.345377
Target:  5'- cGCCaggcgGCGUCGCagguCggUGUCGGCCu -3'
miRNA:   3'- uCGGa----UGCGGCGgau-GuuGCGGCCGG- -5'
26477 3' -59.7 NC_005357.1 + 20613 0.68 0.29862
Target:  5'- gAGCaaccCGCCG-CUGCAACuGCCGGUg -3'
miRNA:   3'- -UCGgau-GCGGCgGAUGUUG-CGGCCGg -5'
26477 3' -59.7 NC_005357.1 + 20759 0.71 0.187889
Target:  5'- aGGCgCUGCGCCGCgCUcgACucauCGCgCGGCUg -3'
miRNA:   3'- -UCG-GAUGCGGCG-GA--UGuu--GCG-GCCGG- -5'
26477 3' -59.7 NC_005357.1 + 21179 0.74 0.124936
Target:  5'- cGGCCUgcuGCGCgGCCUGC--UGCUGGUCu -3'
miRNA:   3'- -UCGGA---UGCGgCGGAUGuuGCGGCCGG- -5'
26477 3' -59.7 NC_005357.1 + 21690 0.74 0.124936
Target:  5'- cGCCUcuACGgCGCCaGCAGCauGUCGGCCu -3'
miRNA:   3'- uCGGA--UGCgGCGGaUGUUG--CGGCCGG- -5'
26477 3' -59.7 NC_005357.1 + 21811 0.74 0.118193
Target:  5'- aGGCCgACaCCGaCCUGCGACGCC-GCCu -3'
miRNA:   3'- -UCGGaUGcGGC-GGAUGUUGCGGcCGG- -5'
26477 3' -59.7 NC_005357.1 + 22236 0.66 0.41364
Target:  5'- cGGCCcugguugucgGCCGCgaugGCGuauuCGCCGGCCg -3'
miRNA:   3'- -UCGGaug-------CGGCGga--UGUu---GCGGCCGG- -5'
26477 3' -59.7 NC_005357.1 + 22652 0.7 0.236693
Target:  5'- cGGCCUGgcaaucagugaaGaCCGCCU-CGugGCCGGCa -3'
miRNA:   3'- -UCGGAUg-----------C-GGCGGAuGUugCGGCCGg -5'
26477 3' -59.7 NC_005357.1 + 23003 0.67 0.353663
Target:  5'- cGCCUG-GUCgGCCUGCugcuGCGCCuGCUg -3'
miRNA:   3'- uCGGAUgCGG-CGGAUGu---UGCGGcCGG- -5'
26477 3' -59.7 NC_005357.1 + 23043 0.69 0.277144
Target:  5'- -aCCUACGCCGaaguggACAAgGCCcuGGCCg -3'
miRNA:   3'- ucGGAUGCGGCgga---UGUUgCGG--CCGG- -5'
26477 3' -59.7 NC_005357.1 + 23198 0.72 0.162958
Target:  5'- gGGCCUgACGCCGCgCUuCAACaGCCuguccgcggagaacGGCCa -3'
miRNA:   3'- -UCGGA-UGCGGCG-GAuGUUG-CGG--------------CCGG- -5'
26477 3' -59.7 NC_005357.1 + 23284 0.68 0.329227
Target:  5'- cGGCgUGCGCCacgaauGCCUGuuuGCgGCCGGCa -3'
miRNA:   3'- -UCGgAUGCGG------CGGAUgu-UG-CGGCCGg -5'
26477 3' -59.7 NC_005357.1 + 23353 0.68 0.291321
Target:  5'- cGGCCU-CGCCGCCgaugaAC-ACGgUGGCg -3'
miRNA:   3'- -UCGGAuGCGGCGGa----UGuUGCgGCCGg -5'
26477 3' -59.7 NC_005357.1 + 23380 0.67 0.345377
Target:  5'- cGCUgaucgACGCCGCCgGCGGcCGCUaccagGGCUa -3'
miRNA:   3'- uCGGa----UGCGGCGGaUGUU-GCGG-----CCGG- -5'
26477 3' -59.7 NC_005357.1 + 23417 0.77 0.067192
Target:  5'- gAGC--GCGCCGgUcagUGCGACGCCGGCCg -3'
miRNA:   3'- -UCGgaUGCGGCgG---AUGUUGCGGCCGG- -5'
26477 3' -59.7 NC_005357.1 + 23623 0.69 0.263523
Target:  5'- -uCCUGCGCCGCCagaucaccaACAAgGUggCGGCCu -3'
miRNA:   3'- ucGGAUGCGGCGGa--------UGUUgCG--GCCGG- -5'
26477 3' -59.7 NC_005357.1 + 23773 0.66 0.419226
Target:  5'- gGGCCgaUGCGCCGCggCUACGAagauggauuccguggUGCCgaucaacuGGCCu -3'
miRNA:   3'- -UCGG--AUGCGGCG--GAUGUU---------------GCGG--------CCGG- -5'
26477 3' -59.7 NC_005357.1 + 23868 0.66 0.415496
Target:  5'- cGCgaGCGCgGCCUccacCGACGUgaucgacuuCGGCCa -3'
miRNA:   3'- uCGgaUGCGgCGGAu---GUUGCG---------GCCGG- -5'
26477 3' -59.7 NC_005357.1 + 23942 0.75 0.108711
Target:  5'- uGGUCagGCGCCGCCcgGCGAgGUCGGCa -3'
miRNA:   3'- -UCGGa-UGCGGCGGa-UGUUgCGGCCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.