Results 141 - 160 of 266 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26477 | 3' | -59.7 | NC_005357.1 | + | 23965 | 0.74 | 0.12844 |
Target: 5'- cGGCCgACGCCGCCg---GCGCCGcGaCCg -3' miRNA: 3'- -UCGGaUGCGGCGGauguUGCGGC-C-GG- -5' |
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26477 | 3' | -59.7 | NC_005357.1 | + | 24032 | 0.67 | 0.345377 |
Target: 5'- cGCCgACgugGCCGCCacCGGCGCCaucggcaaGGCCa -3' miRNA: 3'- uCGGaUG---CGGCGGauGUUGCGG--------CCGG- -5' |
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26477 | 3' | -59.7 | NC_005357.1 | + | 24139 | 0.68 | 0.313641 |
Target: 5'- cAGCCgGCuGCgCGCCUGgccCAGCGCCucgacGGCUg -3' miRNA: 3'- -UCGGaUG-CG-GCGGAU---GUUGCGG-----CCGG- -5' |
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26477 | 3' | -59.7 | NC_005357.1 | + | 24486 | 0.67 | 0.379353 |
Target: 5'- uGGCCUGCGCCaggaaGUCguaGGgGCUGGCg -3' miRNA: 3'- -UCGGAUGCGG-----CGGaugUUgCGGCCGg -5' |
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26477 | 3' | -59.7 | NC_005357.1 | + | 24551 | 0.69 | 0.25045 |
Target: 5'- uGGUCgcgcaGCGCgGCgaugGCGAgGCCGGCCa -3' miRNA: 3'- -UCGGa----UGCGgCGga--UGUUgCGGCCGG- -5' |
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26477 | 3' | -59.7 | NC_005357.1 | + | 24742 | 0.67 | 0.359546 |
Target: 5'- cGCCUGCGCgGCCUcgacccaugcugucGgAAUGaCCuGCCa -3' miRNA: 3'- uCGGAUGCGgCGGA--------------UgUUGC-GGcCGG- -5' |
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26477 | 3' | -59.7 | NC_005357.1 | + | 24758 | 0.76 | 0.091851 |
Target: 5'- cGCCUACGCCcaGCCcgcCGACGCCaucaagaucguGGCCg -3' miRNA: 3'- uCGGAUGCGG--CGGau-GUUGCGG-----------CCGG- -5' |
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26477 | 3' | -59.7 | NC_005357.1 | + | 25128 | 0.77 | 0.071143 |
Target: 5'- uGCCggaauggAUGCgCGCCcGCGGCGCCGGCUu -3' miRNA: 3'- uCGGa------UGCG-GCGGaUGUUGCGGCCGG- -5' |
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26477 | 3' | -59.7 | NC_005357.1 | + | 25324 | 0.67 | 0.379353 |
Target: 5'- cGGCgCU-CGUCGCCgggAUuguccAgGCCGGCCa -3' miRNA: 3'- -UCG-GAuGCGGCGGa--UGu----UgCGGCCGG- -5' |
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26477 | 3' | -59.7 | NC_005357.1 | + | 25485 | 0.72 | 0.168783 |
Target: 5'- cGGCggcACGCUGCUggACGGCGCCGuGCCc -3' miRNA: 3'- -UCGga-UGCGGCGGa-UGUUGCGGC-CGG- -5' |
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26477 | 3' | -59.7 | NC_005357.1 | + | 25529 | 0.7 | 0.214427 |
Target: 5'- cGGUUUugcCGCCGCCgGCAGCGCCcccguaGCCg -3' miRNA: 3'- -UCGGAu--GCGGCGGaUGUUGCGGc-----CGG- -5' |
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26477 | 3' | -59.7 | NC_005357.1 | + | 25620 | 0.68 | 0.291321 |
Target: 5'- --aCUGCGCCGCCUgggcGCGACcaaCUGGCa -3' miRNA: 3'- ucgGAUGCGGCGGA----UGUUGc--GGCCGg -5' |
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26477 | 3' | -59.7 | NC_005357.1 | + | 25755 | 0.67 | 0.353663 |
Target: 5'- cGCUgggcGCGCUGCUgggcggcgGCAACGauGGCCg -3' miRNA: 3'- uCGGa---UGCGGCGGa-------UGUUGCggCCGG- -5' |
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26477 | 3' | -59.7 | NC_005357.1 | + | 25824 | 0.69 | 0.25045 |
Target: 5'- uGCaCcGgGCCGCCguuGGCGCCGGUCa -3' miRNA: 3'- uCG-GaUgCGGCGGaugUUGCGGCCGG- -5' |
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26477 | 3' | -59.7 | NC_005357.1 | + | 25853 | 0.74 | 0.113044 |
Target: 5'- cGGCCUcguccggcGCGUCGCgCUACAACGUcuauaaggagcaaggCGGCCu -3' miRNA: 3'- -UCGGA--------UGCGGCG-GAUGUUGCG---------------GCCGG- -5' |
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26477 | 3' | -59.7 | NC_005357.1 | + | 25991 | 0.68 | 0.321363 |
Target: 5'- cGCCguguucaACGCCGCCgGCGAuuacccCGC-GGCCg -3' miRNA: 3'- uCGGa------UGCGGCGGaUGUU------GCGgCCGG- -5' |
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26477 | 3' | -59.7 | NC_005357.1 | + | 26158 | 0.71 | 0.192955 |
Target: 5'- cGGCU--CGCCGUCUGCGAUG-CGGUCg -3' miRNA: 3'- -UCGGauGCGGCGGAUGUUGCgGCCGG- -5' |
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26477 | 3' | -59.7 | NC_005357.1 | + | 26241 | 0.69 | 0.263523 |
Target: 5'- uGCgcGCGUCGCCgaagGCAcgggcaccCGCCGGCCu -3' miRNA: 3'- uCGgaUGCGGCGGa---UGUu-------GCGGCCGG- -5' |
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26477 | 3' | -59.7 | NC_005357.1 | + | 26378 | 0.68 | 0.30606 |
Target: 5'- cGGCCacgUGCGCgaacugGCCUACAACugGCaGGCCa -3' miRNA: 3'- -UCGG---AUGCGg-----CGGAUGUUG--CGgCCGG- -5' |
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26477 | 3' | -59.7 | NC_005357.1 | + | 26832 | 0.67 | 0.370652 |
Target: 5'- cAGgCUGCGCCGCCc-CGAUggaGCgGGCg -3' miRNA: 3'- -UCgGAUGCGGCGGauGUUG---CGgCCGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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