miRNA display CGI


Results 41 - 60 of 266 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26477 3' -59.7 NC_005357.1 + 36862 0.66 0.39716
Target:  5'- cGGCCagcguugGCGCCGUCgauacCGugGCgGGCg -3'
miRNA:   3'- -UCGGa------UGCGGCGGau---GUugCGgCCGg -5'
26477 3' -59.7 NC_005357.1 + 36228 0.71 0.208874
Target:  5'- gAGCCgcGCGCCGUcaccugcaaacgCUGCGGCaagaCCGGCCu -3'
miRNA:   3'- -UCGGa-UGCGGCG------------GAUGUUGc---GGCCGG- -5'
26477 3' -59.7 NC_005357.1 + 36052 0.75 0.105712
Target:  5'- cGGCCUGCGCCugaUUGcCGACGUgGGCCg -3'
miRNA:   3'- -UCGGAUGCGGcg-GAU-GUUGCGgCCGG- -5'
26477 3' -59.7 NC_005357.1 + 36047 0.69 0.256918
Target:  5'- cGCCgcgGCgGCCGaCCUGguguaaccCAGCGCCccGGCCu -3'
miRNA:   3'- uCGGa--UG-CGGC-GGAU--------GUUGCGG--CCGG- -5'
26477 3' -59.7 NC_005357.1 + 35954 0.74 0.12844
Target:  5'- gGGCCUGCGCgGCgUGCAguuccuGCGCgaCGGCg -3'
miRNA:   3'- -UCGGAUGCGgCGgAUGU------UGCG--GCCGg -5'
26477 3' -59.7 NC_005357.1 + 35821 0.73 0.151435
Target:  5'- cGGCggaCUACGCCauGCuCUACGuggUGCCGGCCg -3'
miRNA:   3'- -UCG---GAUGCGG--CG-GAUGUu--GCGGCCGG- -5'
26477 3' -59.7 NC_005357.1 + 35584 0.69 0.283455
Target:  5'- gGGCCUAcgaaaaggcCGUCGCCgaggGCAACGacgaaacCCGcGCCg -3'
miRNA:   3'- -UCGGAU---------GCGGCGGa---UGUUGC-------GGC-CGG- -5'
26477 3' -59.7 NC_005357.1 + 35388 0.67 0.370652
Target:  5'- aGGCCaUGCGCCuG-CUGCAACaGgCGGCa -3'
miRNA:   3'- -UCGG-AUGCGG-CgGAUGUUG-CgGCCGg -5'
26477 3' -59.7 NC_005357.1 + 35244 0.69 0.277144
Target:  5'- aAGCCcaGCGUCGCCcccgaauccgACaAGCGCCcGGCCc -3'
miRNA:   3'- -UCGGa-UGCGGCGGa---------UG-UUGCGG-CCGG- -5'
26477 3' -59.7 NC_005357.1 + 35060 0.69 0.277144
Target:  5'- uGCC--CGCCGCUggacgaACGACGCCgaggucgaGGCCg -3'
miRNA:   3'- uCGGauGCGGCGGa-----UGUUGCGG--------CCGG- -5'
26477 3' -59.7 NC_005357.1 + 34993 0.69 0.25045
Target:  5'- aGGCCgaaGCCGaaCUGCug-GCCGGCCa -3'
miRNA:   3'- -UCGGaugCGGCg-GAUGuugCGGCCGG- -5'
26477 3' -59.7 NC_005357.1 + 34876 0.67 0.370652
Target:  5'- aAGCCggugGCGCCGCggAUcgagcACGCC-GCCg -3'
miRNA:   3'- -UCGGa---UGCGGCGgaUGu----UGCGGcCGG- -5'
26477 3' -59.7 NC_005357.1 + 34750 0.69 0.253021
Target:  5'- cGGCCgcagauCGCCGCCaaagaacggcgcgugUACGGCaaggaGCCGGCg -3'
miRNA:   3'- -UCGGau----GCGGCGG---------------AUGUUG-----CGGCCGg -5'
26477 3' -59.7 NC_005357.1 + 34714 0.74 0.118193
Target:  5'- gAGCgUGCGCUGCaguucaucgGCAA-GCCGGCCg -3'
miRNA:   3'- -UCGgAUGCGGCGga-------UGUUgCGGCCGG- -5'
26477 3' -59.7 NC_005357.1 + 34674 0.79 0.051884
Target:  5'- gAGCCUGgauuccuuCGUCGCCaACAGCaaGCCGGCCg -3'
miRNA:   3'- -UCGGAU--------GCGGCGGaUGUUG--CGGCCGG- -5'
26477 3' -59.7 NC_005357.1 + 34290 0.75 0.097176
Target:  5'- cGCCgacaccCGCaCGCCcACAaccaACGCCGGCCg -3'
miRNA:   3'- uCGGau----GCG-GCGGaUGU----UGCGGCCGG- -5'
26477 3' -59.7 NC_005357.1 + 34201 0.68 0.30606
Target:  5'- aAGCUgcugACgGCCGCCgacCAGCGCgacuacgaGGCCg -3'
miRNA:   3'- -UCGGa---UG-CGGCGGau-GUUGCGg-------CCGG- -5'
26477 3' -59.7 NC_005357.1 + 34002 0.68 0.29862
Target:  5'- aAGCCUcaAgGCCGUagACaAGCGCaCGGCCc -3'
miRNA:   3'- -UCGGA--UgCGGCGgaUG-UUGCG-GCCGG- -5'
26477 3' -59.7 NC_005357.1 + 33914 0.71 0.191423
Target:  5'- cGCCUACGCCacgGCCcaccgcaucUGCAuuucuucauuacucGCGUCGGCUg -3'
miRNA:   3'- uCGGAUGCGG---CGG---------AUGU--------------UGCGGCCGG- -5'
26477 3' -59.7 NC_005357.1 + 33895 0.68 0.29862
Target:  5'- cGGCCUGCGauaCCUggGCAAguuCGCCGGCg -3'
miRNA:   3'- -UCGGAUGCggcGGA--UGUU---GCGGCCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.