miRNA display CGI


Results 61 - 80 of 266 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26477 3' -59.7 NC_005357.1 + 33870 0.69 0.263523
Target:  5'- cGCCUGuCGCUGCCcgccauCGGCGC-GGCUg -3'
miRNA:   3'- uCGGAU-GCGGCGGau----GUUGCGgCCGG- -5'
26477 3' -59.7 NC_005357.1 + 33852 0.79 0.051884
Target:  5'- aGGCCgcacGCGCgGCCUACGACGCCcaggaugaGGUCg -3'
miRNA:   3'- -UCGGa---UGCGgCGGAUGUUGCGG--------CCGG- -5'
26477 3' -59.7 NC_005357.1 + 33830 0.69 0.284163
Target:  5'- cGCCUACGCCaucCCcACGGuCGCCGuGaCCg -3'
miRNA:   3'- uCGGAUGCGGc--GGaUGUU-GCGGC-C-GG- -5'
26477 3' -59.7 NC_005357.1 + 33786 0.69 0.273
Target:  5'- gAGUacgGCGCgGCCUGgGGCGuuuccgaagggcguaCCGGCCa -3'
miRNA:   3'- -UCGga-UGCGgCGGAUgUUGC---------------GGCCGG- -5'
26477 3' -59.7 NC_005357.1 + 33559 0.68 0.30606
Target:  5'- uGCCcGCGcCCGCUUcgugGCGaccgaggccaacGCGCUGGCCc -3'
miRNA:   3'- uCGGaUGC-GGCGGA----UGU------------UGCGGCCGG- -5'
26477 3' -59.7 NC_005357.1 + 33519 0.67 0.337231
Target:  5'- aAGCCaucgagcGCGCCGCCgAUAGCGCCa--- -3'
miRNA:   3'- -UCGGa------UGCGGCGGaUGUUGCGGccgg -5'
26477 3' -59.7 NC_005357.1 + 33405 0.68 0.295684
Target:  5'- cGUCUggugacgaacugguGCGCCGCCUGCuggaAGCGCCcccgcgcGGCg -3'
miRNA:   3'- uCGGA--------------UGCGGCGGAUG----UUGCGG-------CCGg -5'
26477 3' -59.7 NC_005357.1 + 33207 0.73 0.143382
Target:  5'- cGCCgggcGCGCCGCagaACGuGCGCCGcGCCg -3'
miRNA:   3'- uCGGa---UGCGGCGga-UGU-UGCGGC-CGG- -5'
26477 3' -59.7 NC_005357.1 + 33110 0.68 0.30606
Target:  5'- cGCC-GCGCCGaCgUGCGcCGCCaGGUCg -3'
miRNA:   3'- uCGGaUGCGGC-GgAUGUuGCGG-CCGG- -5'
26477 3' -59.7 NC_005357.1 + 33034 0.68 0.313641
Target:  5'- cGGCCUGCGCgacaugcagUGgCUGCAcaAUGCacgCGGCCg -3'
miRNA:   3'- -UCGGAUGCG---------GCgGAUGU--UGCG---GCCGG- -5'
26477 3' -59.7 NC_005357.1 + 32609 0.67 0.362088
Target:  5'- uGGCCcGCGUCaaggGCC-GCGACGCCgcGGUCg -3'
miRNA:   3'- -UCGGaUGCGG----CGGaUGUUGCGG--CCGG- -5'
26477 3' -59.7 NC_005357.1 + 32546 0.68 0.321363
Target:  5'- cGCCacGCGCCugGCCgagaaGCAgcGCGCCGGUg -3'
miRNA:   3'- uCGGa-UGCGG--CGGa----UGU--UGCGGCCGg -5'
26477 3' -59.7 NC_005357.1 + 32541 0.71 0.19814
Target:  5'- cGGCCaggAUGCUGCCgccgGCGAUGCCGcuCCg -3'
miRNA:   3'- -UCGGa--UGCGGCGGa---UGUUGCGGCc-GG- -5'
26477 3' -59.7 NC_005357.1 + 32454 0.66 0.406263
Target:  5'- -cCCUACGCCcCCUACugccgagguGGgGgCGGCCg -3'
miRNA:   3'- ucGGAUGCGGcGGAUG---------UUgCgGCCGG- -5'
26477 3' -59.7 NC_005357.1 + 32358 0.71 0.19814
Target:  5'- cGCUgcgguCGCCGCCga-GGCcCCGGCCg -3'
miRNA:   3'- uCGGau---GCGGCGGaugUUGcGGCCGG- -5'
26477 3' -59.7 NC_005357.1 + 32307 0.7 0.237917
Target:  5'- cGaCCUcauCGCCGCCauCAAgGCCGGCg -3'
miRNA:   3'- uC-GGAu--GCGGCGGauGUUgCGGCCGg -5'
26477 3' -59.7 NC_005357.1 + 32277 0.67 0.365497
Target:  5'- uGGCUgcUGaCCGCCUuccagaagaaaggagGCGugGCCGGUa -3'
miRNA:   3'- -UCGGauGC-GGCGGA---------------UGUugCGGCCGg -5'
26477 3' -59.7 NC_005357.1 + 32118 0.71 0.191423
Target:  5'- uGGCCgcUGCCGaCCU-CGACGCCcccgaaucccucaaGGCCg -3'
miRNA:   3'- -UCGGauGCGGC-GGAuGUUGCGG--------------CCGG- -5'
26477 3' -59.7 NC_005357.1 + 32090 0.69 0.263523
Target:  5'- aGGCacACGCCGCagcgACGGCuaCGGCCu -3'
miRNA:   3'- -UCGgaUGCGGCGga--UGUUGcgGCCGG- -5'
26477 3' -59.7 NC_005357.1 + 31901 0.67 0.379353
Target:  5'- cGCCaucgAgGCCgaguGCCUGCGGCGUuucgaGGCCu -3'
miRNA:   3'- uCGGa---UgCGG----CGGAUGUUGCGg----CCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.