miRNA display CGI


Results 81 - 100 of 266 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26477 3' -59.7 NC_005357.1 + 31533 0.66 0.400786
Target:  5'- cGCCauuccgguggaggaaUACGCCGCgcGCAucGCGCCGaCCg -3'
miRNA:   3'- uCGG---------------AUGCGGCGgaUGU--UGCGGCcGG- -5'
26477 3' -59.7 NC_005357.1 + 31078 0.68 0.313641
Target:  5'- gGGCCUGgugcCGCUGCUcaccucggUGCAG-GCCGGCg -3'
miRNA:   3'- -UCGGAU----GCGGCGG--------AUGUUgCGGCCGg -5'
26477 3' -59.7 NC_005357.1 + 31021 0.7 0.214427
Target:  5'- gGGCUUGC-CgGCCgagGCAaucGCGCgGGCCa -3'
miRNA:   3'- -UCGGAUGcGgCGGa--UGU---UGCGgCCGG- -5'
26477 3' -59.7 NC_005357.1 + 30997 0.74 0.11495
Target:  5'- cGCCUuauCGgCGaCCUGC-ACGCCGGCUc -3'
miRNA:   3'- uCGGAu--GCgGC-GGAUGuUGCGGCCGG- -5'
26477 3' -59.7 NC_005357.1 + 30444 0.71 0.187889
Target:  5'- gGGCCU-CGCCcugaaucaguuGCCagGgGGCGCCGGUCa -3'
miRNA:   3'- -UCGGAuGCGG-----------CGGa-UgUUGCGGCCGG- -5'
26477 3' -59.7 NC_005357.1 + 30423 0.67 0.337231
Target:  5'- cGGCC-GCGCUGCUggcCGACGUggaaaaGGCCa -3'
miRNA:   3'- -UCGGaUGCGGCGGau-GUUGCGg-----CCGG- -5'
26477 3' -59.7 NC_005357.1 + 30283 0.68 0.313641
Target:  5'- cGCCUACGCgGaagcGCAGCGCgUGGCg -3'
miRNA:   3'- uCGGAUGCGgCgga-UGUUGCG-GCCGg -5'
26477 3' -59.7 NC_005357.1 + 30208 0.67 0.382871
Target:  5'- uGCCggugUGCUGCgUcccgaccaggggcagGCAGCGCgGGCCg -3'
miRNA:   3'- uCGGau--GCGGCGgA---------------UGUUGCGgCCGG- -5'
26477 3' -59.7 NC_005357.1 + 30122 0.68 0.296416
Target:  5'- aGGCC-GCGCCagaacacgccgccgGCCUGCAccGCGUCGGaCa -3'
miRNA:   3'- -UCGGaUGCGG--------------CGGAUGU--UGCGGCCgG- -5'
26477 3' -59.7 NC_005357.1 + 30121 0.67 0.353663
Target:  5'- gAGCaacgaauucgACGCCGCCguagccgGC-ACGCUgGGCCa -3'
miRNA:   3'- -UCGga--------UGCGGCGGa------UGuUGCGG-CCGG- -5'
26477 3' -59.7 NC_005357.1 + 29853 0.67 0.337231
Target:  5'- cGGCUauuucauCGCCGC--GCAGCGCgaGGCCg -3'
miRNA:   3'- -UCGGau-----GCGGCGgaUGUUGCGg-CCGG- -5'
26477 3' -59.7 NC_005357.1 + 29213 0.74 0.116237
Target:  5'- aGGaCUACGUgGUCaagaacaugcaggcgUACAACGCCGGCCa -3'
miRNA:   3'- -UCgGAUGCGgCGG---------------AUGUUGCGGCCGG- -5'
26477 3' -59.7 NC_005357.1 + 29114 1.1 0.000216
Target:  5'- aAGCCUACGCCGCCUACAACGCCGGCCc -3'
miRNA:   3'- -UCGGAUGCGGCGGAUGUUGCGGCCGG- -5'
26477 3' -59.7 NC_005357.1 + 29032 0.74 0.11495
Target:  5'- cGCaacgAUGCCGCCUACAaccgcGCGCUGGgCa -3'
miRNA:   3'- uCGga--UGCGGCGGAUGU-----UGCGGCCgG- -5'
26477 3' -59.7 NC_005357.1 + 28852 0.69 0.270264
Target:  5'- uGCCgaaGCUGUCc-CAGCGCCGcGCCa -3'
miRNA:   3'- uCGGaugCGGCGGauGUUGCGGC-CGG- -5'
26477 3' -59.7 NC_005357.1 + 28524 0.72 0.17339
Target:  5'- uGCCgGCGCUGCUUguugaacggcACGAccuugcggcCGCCGGCCa -3'
miRNA:   3'- uCGGaUGCGGCGGA----------UGUU---------GCGGCCGG- -5'
26477 3' -59.7 NC_005357.1 + 28342 0.69 0.25045
Target:  5'- uGGCCUugGCCucGUCggGCAGCGCgCGGa- -3'
miRNA:   3'- -UCGGAugCGG--CGGa-UGUUGCG-GCCgg -5'
26477 3' -59.7 NC_005357.1 + 28183 0.67 0.337231
Target:  5'- uGCCcACGCCcaGCaggUGCGGCGCCuuguccaggucGGCCa -3'
miRNA:   3'- uCGGaUGCGG--CGg--AUGUUGCGG-----------CCGG- -5'
26477 3' -59.7 NC_005357.1 + 28114 0.72 0.168783
Target:  5'- cAGCCaagGCGCgCGCCaguucagcaACGACGUgGGCCg -3'
miRNA:   3'- -UCGGa--UGCG-GCGGa--------UGUUGCGgCCGG- -5'
26477 3' -59.7 NC_005357.1 + 28023 0.67 0.345377
Target:  5'- aAGCCgaucaugucgGCGUCGCCgaagaAC-ACGUCGGCg -3'
miRNA:   3'- -UCGGa---------UGCGGCGGa----UGuUGCGGCCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.