miRNA display CGI


Results 101 - 120 of 266 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26477 3' -59.7 NC_005357.1 + 28011 0.66 0.424857
Target:  5'- uGCCgcagGCG-CGCCUgGCGACGCCcaGCUu -3'
miRNA:   3'- uCGGa---UGCgGCGGA-UGUUGCGGc-CGG- -5'
26477 3' -59.7 NC_005357.1 + 27824 0.78 0.063452
Target:  5'- cGCgcGCGCUGCCcGCGgugGCGCCGGCCg -3'
miRNA:   3'- uCGgaUGCGGCGGaUGU---UGCGGCCGG- -5'
26477 3' -59.7 NC_005357.1 + 27700 0.7 0.214427
Target:  5'- aGGCCgcGCGCCGgCaGCGGCucgccGCCGGUCa -3'
miRNA:   3'- -UCGGa-UGCGGCgGaUGUUG-----CGGCCGG- -5'
26477 3' -59.7 NC_005357.1 + 27557 0.78 0.060955
Target:  5'- aAGCCgggcaacuuaaagGCGCCcaGCgUGCGGCGCUGGCCg -3'
miRNA:   3'- -UCGGa------------UGCGG--CGgAUGUUGCGGCCGG- -5'
26477 3' -59.7 NC_005357.1 + 27506 0.66 0.415496
Target:  5'- cGGCCUcgGCCGCCagcuucuCGGCG-CGGUCg -3'
miRNA:   3'- -UCGGAugCGGCGGau-----GUUGCgGCCGG- -5'
26477 3' -59.7 NC_005357.1 + 27020 0.66 0.406263
Target:  5'- cGCgUGCaucgGUCGUCcgGCAucuuCGCCGGCCc -3'
miRNA:   3'- uCGgAUG----CGGCGGa-UGUu---GCGGCCGG- -5'
26477 3' -59.7 NC_005357.1 + 26832 0.67 0.370652
Target:  5'- cAGgCUGCGCCGCCc-CGAUggaGCgGGCg -3'
miRNA:   3'- -UCgGAUGCGGCGGauGUUG---CGgCCGg -5'
26477 3' -59.7 NC_005357.1 + 26378 0.68 0.30606
Target:  5'- cGGCCacgUGCGCgaacugGCCUACAACugGCaGGCCa -3'
miRNA:   3'- -UCGG---AUGCGg-----CGGAUGUUG--CGgCCGG- -5'
26477 3' -59.7 NC_005357.1 + 26241 0.69 0.263523
Target:  5'- uGCgcGCGUCGCCgaagGCAcgggcaccCGCCGGCCu -3'
miRNA:   3'- uCGgaUGCGGCGGa---UGUu-------GCGGCCGG- -5'
26477 3' -59.7 NC_005357.1 + 26158 0.71 0.192955
Target:  5'- cGGCU--CGCCGUCUGCGAUG-CGGUCg -3'
miRNA:   3'- -UCGGauGCGGCGGAUGUUGCgGCCGG- -5'
26477 3' -59.7 NC_005357.1 + 25991 0.68 0.321363
Target:  5'- cGCCguguucaACGCCGCCgGCGAuuacccCGC-GGCCg -3'
miRNA:   3'- uCGGa------UGCGGCGGaUGUU------GCGgCCGG- -5'
26477 3' -59.7 NC_005357.1 + 25853 0.74 0.113044
Target:  5'- cGGCCUcguccggcGCGUCGCgCUACAACGUcuauaaggagcaaggCGGCCu -3'
miRNA:   3'- -UCGGA--------UGCGGCG-GAUGUUGCG---------------GCCGG- -5'
26477 3' -59.7 NC_005357.1 + 25824 0.69 0.25045
Target:  5'- uGCaCcGgGCCGCCguuGGCGCCGGUCa -3'
miRNA:   3'- uCG-GaUgCGGCGGaugUUGCGGCCGG- -5'
26477 3' -59.7 NC_005357.1 + 25755 0.67 0.353663
Target:  5'- cGCUgggcGCGCUGCUgggcggcgGCAACGauGGCCg -3'
miRNA:   3'- uCGGa---UGCGGCGGa-------UGUUGCggCCGG- -5'
26477 3' -59.7 NC_005357.1 + 25620 0.68 0.291321
Target:  5'- --aCUGCGCCGCCUgggcGCGACcaaCUGGCa -3'
miRNA:   3'- ucgGAUGCGGCGGA----UGUUGc--GGCCGg -5'
26477 3' -59.7 NC_005357.1 + 25529 0.7 0.214427
Target:  5'- cGGUUUugcCGCCGCCgGCAGCGCCcccguaGCCg -3'
miRNA:   3'- -UCGGAu--GCGGCGGaUGUUGCGGc-----CGG- -5'
26477 3' -59.7 NC_005357.1 + 25485 0.72 0.168783
Target:  5'- cGGCggcACGCUGCUggACGGCGCCGuGCCc -3'
miRNA:   3'- -UCGga-UGCGGCGGa-UGUUGCGGC-CGG- -5'
26477 3' -59.7 NC_005357.1 + 25324 0.67 0.379353
Target:  5'- cGGCgCU-CGUCGCCgggAUuguccAgGCCGGCCa -3'
miRNA:   3'- -UCG-GAuGCGGCGGa--UGu----UgCGGCCGG- -5'
26477 3' -59.7 NC_005357.1 + 25128 0.77 0.071143
Target:  5'- uGCCggaauggAUGCgCGCCcGCGGCGCCGGCUu -3'
miRNA:   3'- uCGGa------UGCG-GCGGaUGUUGCGGCCGG- -5'
26477 3' -59.7 NC_005357.1 + 24758 0.76 0.091851
Target:  5'- cGCCUACGCCcaGCCcgcCGACGCCaucaagaucguGGCCg -3'
miRNA:   3'- uCGGAUGCGG--CGGau-GUUGCGG-----------CCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.